barSeed - Barley Seed Development Database

Probe CUST_333_PI415269222

Source Contig TA40940_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_333_PI415269222	Hv_44K_v2	TAAGAGTCCAAGGGAGGGAGGGAGACACGCAGCTCCTATTGTAGTGGATGGCAATGAGGT	282	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_87.1	1956	2e-24	580 - 639	100	60 / 60	plus	ABC01861 ABC01864
MLOC	MLOC_87.2	2301	2e-24	580 - 639	100	60 / 60	plus	ABC01861 ABC01864
JLOC1	JLOC1_68.2	2274	8e-25	380 - 439	100	60 / 60	plus
JLOC1	JLOC1_68.1	1993	8e-25	444 - 503	100	60 / 60	plus
Harvest21	ABC01863	634	3e-25	147 - 206	100	60 / 60	plus
Harvest35	U35_13864	1684	3e-25	283 - 342	100	60 / 60	plus

Contig Sequence (903 bp)

>TA40940_4513 903 Hv_44K_v2
ATTGCAGCTCGTAACACTCCATCGCTCGTCTCCAGTCTACTCCTCTAGCCAGCTGAGCTC
CTTCGCCGGCGGGGCGAGCCCAGCTCATCTCATCTCATCATATCATCATCTTCCCCATCT
ATATAAGCCCGCCTCTCTCCCCACTTAAGGCACGCCGAGTGTTAGCTAGCAGTACACAGA
TAGTAAGTGTGTGAGGGCAGCGGCAAGTGCGAGCATCAATTAAGGTCAGGCAGAGCAGGG
AGCCAGGGAGAGAGGGATAAGCAAAGCAAGGAGACCCATAGTTAAGAGTCCAAGGGAGGG
AGGGAGACACGCAGCTCCTATTGTAGTGGATGGCAATGAGGTCGAGGGGGTTGCAGATGC
GGCCGCGGCGGCAGCAGAGCCAGAGCCAGAGCCAGAGCGTCCTCGTCGGCGTGTTGCTGC
TGCTGCTGGCGACGGCGGCGCCGCAGGTCGCAGCGGCGGCGGGGCTGAGCCAGAACTACT
ACGCCAAGACTTGCCCCAACGTGGAGGCGCTGGTCCGCGGCGCCGTCACCCAGAAGCTGC
AGGAGACCTTCAACGCCGCGCCCGGCACCCTCCGCCTCTTCTTCCACGACTGCTTCGTCA
GGGGGTGCGACGCGTCGGTGCTCATCTCCGGGCCGGGCGACGAGCACAGCGCGGGCGCGG
ACACGACGCTGTCGCCGGACGCGCTGGACCTCATCACCCGCGCCAAGGCCGCCGTCGACG
CCGACGCCAGCTGCTCCAACAAGGTCTCCTGCGCCGACATCCTCGCCCTCGCCACCCGCG
ACGTCGTCCAGCAGGCGGGAGGGCCGTCGTACCCGGTGGAGCTGGGGCGGCTGGACGGCA
AGGTGGGCACGCGGGCCGTGGTGAAGCACAGCCTCCCCGGCGCCGGCTTCACGCTGGACC
AGC

Homology of Contig TA40940_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48030.3	245	1e-85	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g33740.1	328	1e-86
Arabidopsis v10	AT2G18980.1	323	2e-54	Peroxidase superfamily protein \| chr2:8233419-8235294 REVERSE LENGTH=323