barSeed - Barley Seed Development Database

Probe CUST_33394_PI390587928

Source Contig U35_47905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33394_PI390587928	Hv_44K_v2	ATAGTTTCACTTTCACCTGATCTTTCATGTCGGAATTGTTATCCTCCGTTCCTAAATATA	3	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.958	1.495	1.206	1.001	0.451	0.303
Raw	53.178	124.378	90.744	116.963	18.235	13.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_24550.1	609	4e-23	479 - 539	98	60 / 61	plus
Harvest21	ABC49462	627	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_47905	627	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (627 bp)

>U35_47905 627 Hv_44K_v2
TCTTATATTTAGGAACGGAGGATAACAATTCCGACATGAAAGATCAGGTGAAAGTGAAAC
TATGGTGAACCAACTACAATATATATCAAACATTACCGTCTAAATTCATTGCTCTTATTA
CAGAATGGCACTAATCTATGGTAAACAAGGCAAAGAGATGGATGGAAATACACAAAGATA
ATATGTGTTAAGAGGCAGAGAATATCACAACTAGTCATCTAAATGACAGAAAAATACAGA
CCATGGAGGTATCGTATCGAATACAGATATCACACCATCTATGTGACCTTCTTCAAGAAT
TGTACCTTCTCAAACTCTGGGGTGGCATAACTCTTTTCCACCTCCCATGCATGATGAGAC
ATCATGTTGAATGACGATTTCACCGCCTTCTGGTCAGAGACCTGCCTTGAGAAAGGTATC
CGAACAGCGAAGATGCCTTCCTCAGAATGAACGTGCAAGTCAAAACCAAGTCTGTCTACC
CAAATCATCTTTACATCCAATGCCTGAAAATCTGATTCGACGTAAATACTGTATATCCTA
TGAACGTCCTCAGCATGTTCGCTATTCATTTCCTCAACAACGCTTTCAGCAAAGTTTCGA
AGGGGATCTGGTTCTGCATCACTGTAT

Homology of Contig U35_47905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g15500.1	318	2e-65	protein\|expressed protein
Brachypodium v1_2	Bradi3g19120.1	314	8e-70
Arabidopsis v10	None