- Probe CUST_33393_PI390587928
- Source Contig U35_11977
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33393_PI390587928 | Hv_44K_v2 | CCATTGGCTACGGCCTATGCACTCTACTCAGGCTCAATCAAGCTGTGACGAACATTTTTT | 419 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 12.184 | 6.603 | 1.396 | 0.791 | 0.629 | 0.681 |
| Raw | 133.439 | 112.319 | 21.488 | 18.903 | 3.789 | 5.175 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16742.6 | 2225 | 7e-23 | 1887 - 1947 | 98 | 60 / 61 | plus | ABC24228 |
| MLOC | MLOC_16742.7 | 2563 | 7e-23 | 2328 - 2388 | 98 | 60 / 61 | plus | ABC24228 |
| MLOC | MLOC_16742.8 | 2381 | 7e-23 | 2044 - 2104 | 98 | 60 / 61 | plus | ABC24228 |
| MLOC | MLOC_16742.5 | 2039 | 7e-23 | 1977 - 2037 | 98 | 60 / 61 | plus | ABC24228 |
| JLOC1 | JLOC1_11556.2 | 2243 | 4e-23 | 1932 - 1992 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_11556.1 | 2192 | 4e-23 | 1881 - 1941 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC24228 | 528 | 3e-25 | 50 - 109 | 100 | 60 / 60 | minus | ABC24228 |
| Harvest35 | U35_11977 | 528 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus |
Contig Sequence (528 bp)
>U35_11977 528 Hv_44K_v2 CGGGAACGTGGGGACGGACCTGGACATGGCCACCAACGAGCTGGTGCTCCGGGTGCAGCC CGACGAGGCCATCTACCTCAAGATCAACAACAAGGTGCCCGGGCTCGGGATGAGGCTCGA CAGCAGCAACCTCAACCTCTTCTACTCCGAGAGGTACCAGCGGGAGATACCGGACGCGTA CGAGCGGCTCCTCCTGGACGCCATGGAGGGGGAGCGCCGGCTCTTCATCCGGAGCGACGA GCTCGACGCGGCCTGGGCCATCTTCACGCCCGTGCTCAGGGAGCTCGAGGACAAGAGGGT GGCGCCCGAGCTCTACCCGTACGGCAGCCGGGGTCCTGTCGGCGCGCACTACCTCGCCGC CAACTACAACGTCAGGTGGGGGGACATCAGCAGCGACGGATCCTTGTAGCAAGCTCTGCC CATTGGCTACGGCCTATGCACTCTACTCAGGCTCAATCAAGCTGTGACGAACATTTTTTT TGAGAGTAGGCGACGTATCATAATTTTACAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_11977 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g22350.1 | 589 | 2e-72 | protein|glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g60050.1 | 571 | 2e-87 | |
| Arabidopsis v10 | AT5G13110.1 | 596 | 8e-70 | | Symbols: G6PD2 | glucose-6-phosphate dehydrogenase 2 | chr5:4158952-4161640 FORWARD LENGTH=596 |