barSeed - Barley Seed Development Database

Probe CUST_33392_PI390587928

Source Contig U35_11978

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33392_PI390587928	Hv_44K_v2	TAATGAATCAATGTGAAGGTGGATTTTGTTGCCATCGTCCTCGTCCGTGCATGGCATTGT	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65527.3	3628	2e-24	672 - 731	100	60 / 60	plus	ABC14915
MLOC	MLOC_65527.4	3576	2e-24	672 - 731	100	60 / 60	plus	ABC14915
MLOC	MLOC_65527.2	5575	2e-24	2434 - 2493	100	60 / 60	plus	ABC14915
MLOC	MLOC_65527.1	5990	2e-24	2842 - 2901	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.3	7221	2e-24	3358 - 3417	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.4	7224	2e-24	3358 - 3417	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.8	3775	2e-24	3331 - 3390	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.1	4515	2e-24	3359 - 3418	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.9	2739	2e-24	2310 - 2369	100	60 / 60	plus	None
MLOC	MLOC_65526.5	5659	2e-24	3269 - 3328	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.2	3955	2e-24	3273 - 3332	100	60 / 60	plus	ABC14915
JLOC1	JLOC1_43122.1	3099	8e-25	2890 - 2949	100	60 / 60	minus
JLOC1	JLOC1_43121.2	5642	8e-25	3256 - 3315	100	60 / 60	plus
JLOC1	JLOC1_43121.1	5201	8e-25	3354 - 3413	100	60 / 60	plus
Harvest35	U35_11978	870	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_11978 870 Hv_44K_v2
CTAACTTGGTCAAGAATTCCTGGGTTGGTAACACAGCTGGTGGTGACGACCAATTCGGGA
ATAGCAATTCTGTTTCAGAGCAGGAGCCTAATCTCACCACTCACAACCTGCTTCCGAATT
TGTTCTATCAAAGATACACTCCGGGGCCGCAAAGGGGTAGGGTTGAATCAGTACCAAACC
AGGAGCCAGACGAATTTAATGGTGTTACTAACAGCTGTTTCTTGGACCAAGACATGGTGA
CATCAGCCAGTGGCCGGAAAGTAGTTGGCATTACCAATGGAAGCGTTTCAAATAAAAAGA
AGCCTCGGGCAAAGAATGAAAATAATATGACAACGAGGAGTACAAATCCAACATGCAAGT
CACCACCACAATCGCAGAAAAGACTACAAACACCAGTCAGGAACTCTGTGCAAAAAACAC
CTACCAAGAATGGCAAACAACTTTTGAGTGGTACAGATGGAAGAAGAACTCCAAATGGAA
AAACTAGCACTGCAAAGTAATGAATCAATGTGAAGGTGGATTTTGTTGCCATCGTCCTCG
TCCGTGCATGGCATTGTGCTGACAAATTCAACAGAAAGCTTTTGAAAAGAAGTATCTTCT
TGAAACTCTTTGGAAGCATCAACAATGTGGAGTGATTTACATCCACTGGATGGGTCATTT
TATTACGTTGAATATAGATAGAAGATCTTCAAGAGACAGAAAGAAGTTAAGCATGGGGAA
TTTCATATTTGGGATATGTACGTCTTCTACACTAGAAATTACTGTTGTACCATTTGTTCA
TGAGCGCTGCACCTTGTGAGCAGTTGCTTCTAATGGACAGGCATAGCTGTGTTTATAGCA
TTTTTTAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_11978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None