barSeed - Barley Seed Development Database

Probe CUST_33389_PI390587928

Source Contig U35_47909

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33389_PI390587928	Hv_44K_v2	ATTAGCCACCCTCTTCAGCCCTAAGAGGCATGTAAAAATGATGTATGGGTAGAACCCTAG	58	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.306	0.379	1.094	1.763	1.101	1.109
Raw	58.363	114.008	294.158	741.763	158.811	175.965

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC49468	527	3e-25	59 - 118	100	60 / 60	minus
Harvest35	U35_47909	527	3e-25	59 - 118	100	60 / 60	minus

Contig Sequence (527 bp)

>U35_47909 527 Hv_44K_v2
GGGGGGATGATCTATTGCTTGGAAAAGGGGAAAAACAGAGTAGCGCGCCACCGGCGGCCT
AGGGTTCTACCCATACATCATTTTTACATGCCTCTTAGGGCTGAAGAGGGTGGCTAATAA
AGGCCAGCCGAAGGAAAGGAAAACAAGCTTAAACAGCTGAAATAAATGAAGTGCTATCGG
AAAGTGCACAGCGACGCGGACACAGTCGGTGACCGTCGGATGCTGGATCGACGCGCCACG
CCTCCTCCCGCTCGAAGCGCTATATTTGAATCACAGTCGTTGGATGCTCTATCAACTCAC
CAAAGCAAAACCGGCACTTGGAAACAGGGGAGGTCATCTCTCGAGCCTGACAATACCCCC
TTGTTGAGCGGCAGCTTGCCCTCAAGCTGCAAACAGTGGAAAGACTTTTTGTATGAAGGC
AGAATCTTCCCACGTAGCCTGTTCCACTGGAATATTGACCCATTTGATCAACCAAAGCAC
CACAGGCACACTTATATCTCCCTGAAATCTTGGCACTAGCTTCCTGT

Homology of Contig U35_47909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None