barSeed - Barley Seed Development Database

Probe CUST_3336_PI390587928

Source Contig U35_23868

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3336_PI390587928	Hv_44K_v2	CGCGAGGTGCCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAAGGGCTCTTCTTCTCC	378	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34992.2	4401	7e-23	1925 - 1984	98	59 / 60	minus	ABC07298
MLOC	MLOC_34992.1	2882	7e-23	1945 - 2004	98	59 / 60	minus	ABC07298
JLOC1	JLOC1_22611.1	2917	4e-23	897 - 956	98	59 / 60	plus
Harvest21	ABC19654	462	1e-24	404 - 462	100	59 / 59	plus
Harvest35	U35_23868	438	3e-25	379 - 438	100	60 / 60	plus

Contig Sequence (438 bp)

>U35_23868 438 Hv_44K_v2
CAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGCGACTCGGCGGTGGGCAAGACGCAG
CTGCTGGGGCGGTTCGCCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTC
GAGTTCCAGACCCGCACCCTCACCCTCCACCGCAAGCGCGTCAAGGCGCAGATCTGGGAC
ACCGCCGGACAGGAGAGGTACCGGGCGGTGACGAGCGCCTACTACCGGGGCGCGCTGGGC
GCCATGGTGGTGTACGACGTGACCCGGCGCGCCACCTTCGACCACGTGCCCCGCTGGGTA
GAGGAGCTCCGCGCCCACGCCGACGGCTCCACCGTCGTGGCGCTCGTCGGCAACAAGGCC
GACGCGCCGGCGCACCGCCGCGAGGTGCCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAG
CAAGGGCTCTTCTTCTCC

Homology of Contig U35_23868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g35860.1	240	9e-91	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g35120.1	226	7e-73
Arabidopsis v10	AT1G01200.1	237	3e-74	\| Symbols: ATRABA3, ATRAB-A3, RABA3 \| RAB GTPase homolog A3 \| chr1:86715-88145 REVERSE LENGTH=237