- Probe CUST_33369_PI390587928
- Source Contig U35_47912
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33369_PI390587928 | Hv_44K_v2 | AGCTTTCTGACTTTCAGATTCCATATTCATCGAGGCCATGCATTGACAGACTAACTACAG | 0 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.825 | 1.716 | 0.846 | 1.043 | 0.778 | 0.785 |
| Raw | 28.471 | 26.246 | 11.618 | 22.656 | 4.546 | 5.545 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC49476 | 349 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_47912 | 349 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus |
Contig Sequence (349 bp)
>U35_47912 349 Hv_44K_v2 CTGTAGTTAGTCTGTCAATGCATGGCCTCGATGAATATGGAATCTGAAAGTCAGAAAGCT TTTTTTACAGTAACTATAACCATCACACATTCTTATATTTGTATCTCATTGCGCAACCAA TGTAAACCAGCAAATTACAAAGCTGATCCCTGCCAGCAACCAAAAAAACCGGTCGAGATG GCCTTCATTCAAGTTATCTGGGATCCATCCTGCATCTCCTCCTTGAGTTGTAAGGTATGA CACCAAGGTCAATATGATTGAGCTTAAATAGCTTCCCACCGTGACCGTAACAAGTGCCAA TGCAGAACATAAGCTCCTCATGGCATCTGGGGCCTGACCATATAAGAAC
Homology of Contig U35_47912 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |