barSeed - Barley Seed Development Database

Probe CUST_33366_PI390587928

Source Contig U35_11985

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33366_PI390587928	Hv_44K_v2	CAGACAACAGTCAGTAGGATATGTTGATCTAAAGGTTCTATACTAGATGTCATCACTTTT	71	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70482.1	4644	7e-23	2862 - 2921	98	59 / 60	minus	ABC02275 ABC02277 ABC02278 ABC26803
MLOC	MLOC_70480.1	3799	7e-23	1720 - 1779	98	59 / 60	minus	ABC02275 ABC02277 ABC02278 ABC26803
JLOC1	JLOC1_46775.1	2727	4e-23	1786 - 1845	98	59 / 60	plus
JLOC1	JLOC1_46773.1	2418	4e-23	1697 - 1756	98	59 / 60	minus
Harvest21	ABC51223	551	1e-23	419 - 478	98	59 / 60	plus
Harvest35	U35_11985	549	3e-25	72 - 131	100	60 / 60	minus

Contig Sequence (549 bp)

>U35_11985 549 Hv_44K_v2
TACAAATTTGCAGTTAAAACGCTCCACATATGTCCGCACGAAAAAAAATACAATTCTCCA
AAAACATACAAAAAAGTGATGACATCTAGTATAGAACCTTTAGATCAACATATCCTACTG
ACTGTTGTCTGGATCAGAACCTAAGCAGCTCCATGACATGACTGACATTGACATTGTCTT
GAAGCTTAACTTACAGCATTAATGGTGATCTCACAAGAACATGGGGGAGACAAAAACTGA
AAAGTGTGTTGGAGAACTTATTTGATCTGCGCTTGTTAACACCCACCCAGCTGTGGATGG
AGGGCTCCTCTGTTTTCCAGTCTTGGTCAGGGCTGCATCTGCACCTGCACTTGCTGCTGC
TGCTGTTGTGGTTGTTGTTGCTGCTGTTGCTGCTCCGAGTCATCCTCTGCAACTTTTGGA
GGCTGCTGCAGGGCCTCCTGCCTCTTGCCCCACAGCAGCAGGTACAGCCCACCTATCACG
AACACTGATCCCAGCACACTTCCGAGGTAGAGCGTCTCGTGCAGCACGGTGAAGTCCATG
ACGGAGACG

Homology of Contig U35_11985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None