barSeed - Barley Seed Development Database

Probe CUST_33361_PI390587928

Source Contig U35_11988

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33361_PI390587928	Hv_44K_v2	TTTGCATGCCTGGTTTAGATGATGCAGCAATGCCAGAAGGTGATTACATGGATTTTCCCT	548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371984	2840	2e-24	973 - 1032	100	60 / 60	plus	ABC14131
MLOC	AK366549	2859	2e-24	1056 - 1115	100	60 / 60	plus	ABC14131
MLOC	MLOC_77187.1	2094	2e-24	892 - 951	100	60 / 60	plus	ABC14131
MLOC	MLOC_34981.1	482	7e-23	56 - 115	98	59 / 60	minus	None
JLOC1	JLOC1_51482.1	2138	8e-25	1068 - 1127	100	60 / 60	minus
Harvest21	ABC24938	611	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_11988	611	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_11988 611 Hv_44K_v2
GGTCTGCGGAGGCGTACCTAAACCTTCACATGATCAGCATGTAGTTCAAAGTATTGAACC
AGGGATGAGTACAGTGAGCTGTTATGCGCAAGCAGGTGGAAGCTACAGTGGTGTACAACA
GACACATCCTGAAATAAATGGTCATTCTTTCCATGCACAGCATCCTGGGAGCATGATAAA
CGATGAGGATGCCACCAATAATGCACCATATGTCTATTCAGACGTTCAAATATATGACGC
CTACGCACAAAAAGTTCCTGAGCCAAGTGAAGTGAACAATGTCTCTCTTAGAGGTATTAC
AGATTTTCAGGATTCTATGCAGTTTCAGCAATTGGCATCTAGCAACCAATGCGGCAATGA
AGTAGCAGAATCAAAAGAAATGTTGATTACTGATCAAGTTGGAGTTGAACACGTCCATTT
CCCTGCTAATAACAGTGGAGAAGCAATCTGGAACGGNGTTGATGAAACAGACACACTCAC
TCTTGCTGATGGTAAGAAAATAAAGACAGCCAACAGAGACCCTCTAGCATTGCAAGCAGA
TGGTGGGATTTGCATGCCTGGTTTAGATGATGCAGCAATGCCAGAAGGTGATTACATGGA
TTTTCCCTTTT

Homology of Contig U35_11988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58640.2	814	3e-68	protein\|FHA domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g05130.2	789	2e-82
Arabidopsis v10	None