barSeed - Barley Seed Development Database

Probe CUST_3335_PI390587928

Source Contig U35_23869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3335_PI390587928	Hv_44K_v2	ATGGTTCCAATTATGGATCAGACCACAGGAAGATATCTTACAGGGTGGCTTTGGCAGTTG	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361095	2968	2e-24	1631 - 1690	100	60 / 60	plus	ABC38394
MLOC	AK363806	3074	2e-24	1717 - 1776	100	60 / 60	plus	ABC38394
MLOC	MLOC_79184.2	2573	2e-24	1343 - 1402	100	60 / 60	minus	ABC38394
MLOC	MLOC_79184.1	2611	2e-24	1381 - 1440	100	60 / 60	minus	ABC38394
JLOC1	JLOC1_52760.1	2580	8e-25	1172 - 1231	100	60 / 60	plus
Harvest21	ABC22377	1067	3e-25	461 - 520	100	60 / 60	plus
Harvest35	U35_23869	1067	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_23869 1067 Hv_44K_v2
GCAGATGCCATCTGCAACGGATCAAGGTTGCAGTTTCTTGTGCTCGATCACAACGAGTTC
TCGGGTAGCATCCCGCACGGTATAGGTGGCTGCAGCCGGCTTCTTGAACTGCAGCTTGCC
AACAACAATCTGAGTGGTGTGATACCAGCTGAAATGGGCAAGATCAAGAGCTTACAGATT
GCGCTCAACCTTAGCTTCAACCACCTTTTAGGGCCGCTGCCCCGAGAACTTGGTCGGCTC
GATAAGCTCGTCGCGCTTGATTTATCCAGCAATGAGATATCTGGTGAGATCCCTGGTGAC
ATGAGAGGGATGCTGAGCTTGATAGTTGTCAACTTGTCAAACAACCGGCTCCGTGGTGCC
ATACCGGAGTTTGGGCCATTTCAGAAAAGTGCAGGGTCCAGTTTCTCTGGCAATGCCAAG
CTGTGCGGCGACCCGCTGGACGTGGACTGTGGACCGATTTATGGTTCCAATTATGGATCA
GACCACAGGAAGATATCTTACAGGGTGGCTTTGGCAGTTGCTGGGTCCTGCGTGCTCATC
TTCTCGGTGGTATCGTTGGTGGTAACGTTGTTCATGTGGCGTGAGAGGCAGGAGAAGGAG
GCCGATGCAAAGAAGGCCGAGGCAGGAGAGGTGGTCGTCGAAGCACGGCATGTCATGGCC
TCAAGTGTGTTCATCGAGAGCTTGCAGCAGGCCATTGATTTCCAGACTTGTGTCCAGGCC
ACGTTCAAGGAGGCCAGTGCAGTGAGGAGCGGCACGTTCAGCACAACCTACAAGGCTGTC
ATGCCATCAGGCATGGTGGTGTGTGTCAAGAAGTTGAAGTCGGTCGACCGCGCGGTCGTC
CACCACCAGGCCAAGATGATCCGGGAGCTTGAGCGTCTCGCGCACGTAAACCATCCCAAC
CTTGTGCGTCCCATTGGGTATGTCATCTACGAGGATGTTGCATTGCTGCTGCAGTATGAC
TTGCCCAACGGAACATTGCTTCAGCTGCTGCACAATTCAGACAACTGCGATGGTACTGAC
AACCAGAAGCCTGACTGGCCAAAGCTCTTGTCAATTGCAATGGGTGT

Homology of Contig U35_23869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g10630.1	901	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g54280.1	860	0.0
Arabidopsis v10	AT2G41820.1	890	2e-110	Leucine-rich repeat protein kinase family protein \| chr2:17447170-17449914 FORWARD LENGTH=890