barSeed - Barley Seed Development Database

Probe CUST_33356_PI390587928

Source Contig U35_23961

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33356_PI390587928	Hv_44K_v2	AGATTTGGTCCACGATGCGTCGCTGCTGGACACGAAGAAAGACGACACCTTTGCGAGGGA	148	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.477	2.136	1.342	0.746	0.313	0.401
Raw	49.024	85.693	57.503	45.415	7.462	10.690

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358477	2172	2e-24	457 - 516	100	60 / 60	plus	ABC14020
MLOC	MLOC_59762.1	2934	2e-24	2410 - 2469	100	60 / 60	minus	ABC14020
MLOC	MLOC_59762.3	2470	2e-24	2236 - 2295	100	60 / 60	minus	ABC14020
MLOC	MLOC_59762.2	2011	2e-24	1775 - 1834	100	60 / 60	minus	ABC14020
JLOC1	JLOC1_38907.2	2772	8e-25	751 - 810	100	60 / 60	plus
JLOC1	JLOC1_38907.1	2499	8e-25	478 - 537	100	60 / 60	plus
Harvest21	ABC18371	1193	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_23961	898	3e-25	149 - 208	100	60 / 60	plus

Contig Sequence (898 bp)

>U35_23961 898 Hv_44K_v2
CGAGCTCGGTCGGCGACGGCTCCAAGCGCCAATTAGATTTGGGGGTGCCGGGGCAGGACG
CGGCATTGTCCAGGGAGGGGAGCAAGGCCGAGGTGCTCGACACGGACGGCGACGACAGCA
GGAGGACATCCTCCTCCTCCCCGGCGCAAGATTTGGTCCACGATGCGTCGCTGCTGGACA
CGAAGAAAGACGACACCTTTGCGAGGGACGGCGATGCGGCCGTGGAGGCCGCCAAGGACG
ATGACGCCGCCACCGGCGCTCTTCTCCCTCCGCTGTCGTCCCAGGAACCGGCAAACGGCA
CGCAAGAGGAACAAGGTGTTCTTGAGGACCAGGAGCTGCAAGTGCAGGACGCCATCGCCG
CCGCCAGTTCTCCAAACAAGAGCAGCAGCAGCAGCGATGGCGGCTCAGAGTCCGTCGTTC
AATCCGACCCGGCGACGCTTCCTGCTCCCGTCCAGCAGACTCCTCCTCCTGCCGTTCCAG
AGGCTCCCAAGCAGGTGGCCACGGCTGCTCCGGTCCAGCAGATTCCCCTCATCCCAGAGG
CTGCCAAGCAGCCAGGTCCGGAGGTGTCGACGGCGGCGAGGCGGGAGTGGAAGCCGCTGT
GCGACCTGACGTCGAACCGGCGCATCGACTGGTGCGAGCTGGACGGCGACGTGCGCGTCC
ACGGCGCCCAGGGCACGGTCACCCTGGTGGGCACGGCCAAAGCCGAGGAGTGGCGTGTCA
AGCCGTACCCTCGCAAGGTCGACCCCAACGCCATGCGCCACGTGCGCGAGATCGCCGTGC
GCTCCACCACGCTCCCCGGCGGTGACGAGGAGTGCGCGGTCAAGCACTCGGTGCCGGCGC
TGTTGTTCTCGGACCGCGGGTACACGGGCAACTACTTCCACGCCTACACGGACGTGAT

Homology of Contig U35_23961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None