barSeed - Barley Seed Development Database

Probe CUST_33352_PI390587928

Source Contig U35_23966

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33352_PI390587928	Hv_44K_v2	TCAATCATCCTGCATGTTTACAGTCGTGCGCATAAGGCTGAGCTATGTTTGTGTATGTTC	352	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359743	2390	2e-24	814 - 873	100	60 / 60	plus	ABC43069
MLOC	AK375497	2023	2e-24	946 - 1005	100	60 / 60	plus	ABC43069
MLOC	MLOC_21029.3	1938	2e-24	441 - 500	100	60 / 60	plus	ABC43069
MLOC	MLOC_21029.1	1762	2e-24	469 - 528	100	60 / 60	plus	ABC43069
MLOC	MLOC_21029.2	1656	2e-24	363 - 422	100	60 / 60	plus	ABC43069
JLOC1	JLOC1_14588.1	1882	8e-25	476 - 535	100	60 / 60	plus
Harvest21	ABC21193	595	3e-25	359 - 418	100	60 / 60	plus
Harvest35	U35_23966	589	3e-25	353 - 412	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_23966 589 Hv_44K_v2
GCAGGAGTTCACCACCCTTCTCGACACGCTCTGCAAGTACAAGTACCCCAAGGTTGCTGT
GGAGGTATTCAATAAAAGAAAATACAAATACGAACCAAATGAAAAGATGTACACTATCCT
AATTTATGGCTGGTGCAAGGTAAACCGAAGTGACATGGCTCAGAAATTCCTAAAAGATAT
GATTGATCATGGGATAGAGCCGAACATAGTGACATACAACATTCTCTTAAATGGTATCTG
TAGGCATGCAAGTTTGCACCCTGATAACCGGTTTGATAGAACAGTTAATGCAGCTGAGAA
TCTCTTGAAGGAGATGAATGACAGGGGAATTGAACCAGATGTAACGAGCTACTCAATCAT
CCTGCATGTTTACAGTCGTGCGCATAAGGCTGAGCTATGTTTGTGTATGTTCCGCTCGAT
GAAGGATAGAGGCATCTGCCCCACAGTGGCAACCTACACTTCTGTGATCAAGTGCCTTGC
TTCGTGTGGAAGACTGGAAGATGCTGAGAGTTTGCTCGGCGAGATGGTTAGTGAAGGGGT
GTGTCCCTCCCCAGCGACCTACAATTGTTTCTTCAAAGAGTACCGAGGG

Homology of Contig U35_23966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g28180.1	512	8e-130	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g18590.2	523	2e-134
Arabidopsis v10	None