barSeed - Barley Seed Development Database

Probe CUST_33321_PI390587928

Source Contig U35_23974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33321_PI390587928	Hv_44K_v2	GACTAATCACTATACATGTATGCAACAAAACACTGGGTGAAAATTACTTCACGCTGAAAA	390	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.001	3.007	1.286	0.829	0.491	0.427
Raw	76.370	69.744	26.610	26.960	4.921	4.263

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17768.2	1048	2e-24	866 - 925	100	60 / 60	plus	ABC18010 ABC19900
MLOC	MLOC_17768.3	1252	2e-24	947 - 1006	100	60 / 60	plus	ABC18010 ABC19900
MLOC	MLOC_17768.4	1237	2e-24	932 - 991	100	60 / 60	plus	ABC18010 ABC19900
MLOC	MLOC_17768.1	1337	2e-24	1032 - 1091	100	60 / 60	plus	ABC18010 ABC19900
JLOC1	JLOC1_12270.3	1122	8e-25	890 - 949	100	60 / 60	plus
JLOC1	JLOC1_12270.2	1087	8e-25	855 - 914	100	60 / 60	plus
JLOC1	JLOC1_12270.1	1095	8e-25	863 - 922	100	60 / 60	plus
Harvest21	ABC19900	463	3e-25	391 - 450	100	60 / 60	plus	ABC19900
Harvest35	U35_23974	463	3e-25	391 - 450	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_23974 463 Hv_44K_v2
TGGATTACTACGCGCAGCTCCGGCGAGCGCGCGGACGAGGCCGAGGAGGCGCTCCGGGAG
ATGGTGTCTCTGGGGTACCAGCTGATGCGTTTCAGTTCGGATTGGTGGCCAAATGCTATG
GGAAGGCAGGCCAATTGGCTGAGATGGAGAGGGCGATTGCGTCCATGTCTGACGCCGGCA
TCCGTCTCGTCGTCTGTTGCGCGGGCACGCCGACGTCGGACTACTTCGCCAGCCAGGCAG
GTGGCTGGTTCTTGCAGGATCAGCGAACGCTGCCGTTTCCTTGTCGGCTGCTGCAGCTCC
GACGAGCGCGCGCACGAGCTCCGTTGCTGTAGCTCCGGCAAGCGCGCGGACGAGCCCGTC
TGCTCCACGCGCCCGTCTGCTGCAGCTCCAGACTAATCACTATACATGTATGCAACAAAA
CACTGGGTGAAAATTACTTCACGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_23974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None