barSeed - Barley Seed Development Database

Probe CUST_33318_PI390587928

Source Contig U35_23977

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33318_PI390587928	Hv_44K_v2	AAACCTCCTCCAAGATTGGTAGGATGTTTTAGGCAGGAGCTCTGACCTGCAATAGCAATA	774	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.592	0.681	0.975	1.579	1.102	1.226
Raw	108.130	197.878	244.079	623.885	153.642	185.029

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12326.1	1840	7e-23	1741 - 1800	98	59 / 60	plus	None
JLOC1	JLOC1_8271.1	1974	4e-23	1740 - 1799	98	59 / 60	plus
Harvest35	U35_23977	1024	3e-25	775 - 834	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_23977 1024 Hv_44K_v2
GGATTGCCGAGCAGTTCTATGCAGGAAAGGCATGGCCATGGAGATGTCCTGTGATCACAG
GCCAACATACGAAGCAGAGCGTCAAAGGGTCACTGAGTGTGGGGGGTACATTGAGGATGG
CTACCTCAACGGAGTGCTGTCGGTGACTCGGGCTCTAGGGGACTGGGACATGAAAATGCC
TCAAGGCTCAGCGTCACCTCTCATTGCAGAGCCAGAGTTCCAGCAGACCATCCTCACAGA
GGATGACGAGTTCCTCATCATAGGCTGCGACGGGATATGGGATGTCATGACCAGCCAGCA
GGCGGTGACCCTGGTCCGAAAGGGGCTCCGGCGGCACGATGACCCCGAGAGGTGCGCGAG
GGAGCTCGCCATGGAGGCGAAGAGGCTCCAGACCTTTGACAACCTCACGGTGATCGTTAT
TTGCTTTGCCTCTGAGCTCGGTGGGTGCCTGCCGCCTTCGGAGCAGGCGTCGTCGAGGAG
GATAAGATCGTGCAAGAGCCTGTCTGCTGAGGCCCTTTGCAACCTGAGGAGACTGCTGGA
GTCTGATCAGTAGACGATTGCTGTAGGGCTTATTGAGTTATTGTGCCGACGGGTGTTAGA
TGCCTCGTACGGCTGCGCTTGCGCAGCCAGCAATTTTGTAGGGCACCCGTCGTTTGTTCG
TTGCAGTTTTTTCCTTTCTTGTTTCTTTTGTGTTGACTACTGCAGTCTTTCGTGTACATA
CTCCATTGGTTCATGTACCGGCGATCAGTTGGTTAGTGATGATTTATGTGTGAGAAACCT
CCTCCAAGATTGGTAGGATGTTTTAGGCAGGAGCTCTGACCTGCAATAGCAATAGCAGTG
CAATATATAAACAGAAGGAAAGGAGTTCATACGTACAGGTCAAGCGCCCAAGAGGAGTTC
ATCTTTGTCCTGAGCCTGATGAGGTGCAGAGGCTATATGTATGTATGTATGTGTGTATAT
ATATATACATATATATAATTGGATTGATGTGACGCTCCTAAAAAAAGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_23977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19130.1	381	4e-108	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi2g11350.2	330	1e-118
Arabidopsis v10	AT3G62260.2	384	6e-70	Protein phosphatase 2C family protein \| chr3:23038516-23040391 REVERSE LENGTH=384