barSeed - Barley Seed Development Database

Probe CUST_33302_PI390587928

Source Contig U35_23981

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33302_PI390587928	Hv_44K_v2	AATTGAGCAGTAGTTGCACTTGCACTTGCATCTATGATATCCCACAGTTTATCGAGCGGC	1226	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.567	1.761	1.150	0.985	0.241	0.222
Raw	64.668	118.427	68.015	93.768	7.108	7.138

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20210.2	3007	3e-21	2653 - 2706	100	54 / 54	plus	None
MLOC	MLOC_20210.1	3165	3e-21	2770 - 2823	100	54 / 54	plus	None
JLOC1	JLOC1_14017.3	3116	2e-21	2717 - 2770	100	54 / 54	plus
JLOC1	JLOC1_14017.2	2906	2e-21	2507 - 2560	100	54 / 54	plus
Harvest35	U35_23981	1296	3e-25	1227 - 1286	100	60 / 60	plus

Contig Sequence (1296 bp)

>U35_23981 1296 Hv_44K_v2
ATGACACCGGTGGTGCATCTGGGTTTAAAGAGGAGGAATTGCCATCAATATTTGATTGCA
TGAGGACTGCTATCGAATTAGCAGAGGTGGGCAACACGGCCATTATTGTTGATCCATCAA
CTATGCAAATAATTTCGAAGGCTACAGATCAAACACACCAGCATGATGGCTTTCTGAAAA
GGAACAGATGTGTCAATGTGGAAGCAGATGGTGCCCGCTCTTTGGCTGAAACAACTGAGG
ATAGCGATGGCAGGCTGTTGTTGTCAAGCTTCCATGTTATCCATAGCTTGAACTTGGAGG
TCTCATGTATAAACTCTTGGGGATGGACAAAACAGAGGTCTTCTGAGCAGAAGAAATTGT
CATATGAAGGTGATTTTTTTTGGCATCGACATGCTGCCATAGTTGCCATTGAAAATGCTG
CCAAGAGAGATCGAATGCTGTTCCATACTTCAACTTCTCGAATAGCCGAGCCAAACTTAA
ATGGCGATATGGAGAATTGTTTTGATAATGAACCAGCAAAGCGGCCAAAGATAGTTGCAA
AGGATAAAGAACAAGCTGAGCATCAAGACTGCGGGAGTGACTTGTCTGGAACAAACAGAC
CATATCTCTGCACAGGATTCGACATCTACCTTGTTTGGGAACCCTGCACAATGTGTGCTA
TGGCTCTTGTACATCAAAGATTCAAGCATGTCTTCTATGCTTTCCCTAATCCAACCAGTG
GAGCGCTGGGCAGTGTCTACAGATTGCATGGGGAGAAAAGTTTAAATCACCATTACTCTG
TGTTTAGGGTAAAAGTGCCAGAGTCATATTTGAATGTTTCAAGTGATTACCCTGAGAAAG
TCTGCTCAGATTTTGCATCATCTTAGGTCTTGAAAATCTATGAGCTTTCCTAGGCAGCGG
CCGCTGCCAAGGCCCAATGGAAAGGAGGTTCTCTTCTAAGCATATAAGGTGCTGCATGCA
ATGGGTAATGCCACTGGTATCTGGGGTCTTGTTCAGGTGCACAGCTTCTTTGCACAATAC
CAATCAAGAACTAATTAAAGCATAACAGAGAAAGAAGGGAAATACAAGAGAGGGAAATGA
AATCTCGCGCACCTAGAAACTTTATAAGGATCAGCTACAAGTTGTAATAGTGGAAGGAAC
ACCGCATCCCTGCAGATCCCTTCCAGTACCAACAGCCATGTGATGGAGAACATCAATATT
TCGCAGACGCCTTCTGAACTTCTAGTAATTGAGCAGTAGTTGCACTTGCACTTGCATCTA
TGATATCCCACAGTTTATCGAGCGGCCGCTCGAGCA

Homology of Contig U35_23981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04210.2	412	4e-113	protein\|hydrolase/ zinc ion binding protein, putative, expressed
Brachypodium v1_2	Bradi1g50950.1	419	1e-141
Arabidopsis v10	AT5G24670.2	404	2e-51	Cytidine/deoxycytidylate deaminase family protein \| chr5:8448880-8451046 FORWARD LENGTH=404