barSeed - Barley Seed Development Database

Probe CUST_33288_PI390587928

Source Contig U35_47942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33288_PI390587928	Hv_44K_v2	TTTTTTAACCCTTGGTGCTTCGTACAAGCGGAAATTTGCTCCCTCTGTTCCATAATACCC	15	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15202.3	1520	2e-24	889 - 948	100	60 / 60	minus	ABC02665
MLOC	MLOC_15202.2	2413	2e-24	1752 - 1811	100	60 / 60	minus	ABC02665
MLOC	MLOC_15202.1	3258	2e-24	2598 - 2657	100	60 / 60	minus	ABC02665
JLOC1	JLOC1_10417.1	3389	8e-25	2598 - 2657	100	60 / 60	minus
Harvest21	ABC49538	670	3e-25	16 - 75	100	60 / 60	minus
Harvest21	ABC02665	887	6e-22	833 - 886	100	54 / 54	plus	ABC02665
Harvest35	U35_47942	670	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (670 bp)

>U35_47942 670 Hv_44K_v2
CATTTTGTTCAGAGGGGGTATTATGGAACAGAGGGAGCAAATTTCCGCTTGTACGAAGCA
CCAAGGGTTAAAAAACTAGCAAGTTGCAACAACTTCTTAGCTATATATAAAATCTTTACA
ATGGCTAGCATGCCTTAGTTCACCAAACAGGTCACACGCACTGAAAAAACAACAGGAGAT
CAAGCACAGGGACACAACGGCCATGGGTTTTTTAATGTTTTAGTTCGGTGGTACAGACCA
GCAAAGCCAGAAATGGAGACGTTCCGGGCATCGCTTATTGCAGGACCTGGTGACGCTAGT
CCGCTGTCCAGCTCTGCTCCACGACCTCACGCACCTTGCGGTTGTACTCGCGCTTGTTCT
CGCTGTACATTCTGGCTGCTTCGGAGTTGGCTGGAGAATTCGGATTCGGGTCGCACAGCA
GGGACTGGATAGAGGTCAATATTGCTGCAACATCATATATAGGGCTCCACTGGTTCTGTA
GGATATCCAAGCAGATGCTTCCATCTGCATAGATGTTTGGGTGGAACATCCTTGAGACAA
ACCGAACAGTTGGTGGCTTGTTGGGGTAATCTTCTGTGAATTGCAGGGTCAGCTTGAACG
TACCTCCATCCCACGGCATGTCATCGGGCCCGAATATGACGGCGTTCCAGAGCGTTATGT
TGTTGTCGTG

Homology of Contig U35_47942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07240.2	153	9e-87	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g06090.1	153	1e-87
Arabidopsis v10	AT1G14400.1	152	3e-84	\| Symbols: UBC1, ATUBC1 \| ubiquitin carrier protein 1 \| chr1:4927294-4928136 REVERSE LENGTH=152