barSeed - Barley Seed Development Database

Probe CUST_33287_PI390587928

Source Contig U35_47944

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33287_PI390587928	Hv_44K_v2	GGATGAAAATGAATGTATCTGGTGGGAGAACACTGGATAATAACACGTAGCACATCCAAC	50	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6172.1	2436	2e-24	1948 - 2007	100	60 / 60	plus	ABC02724 ABC15665 ABC49964
JLOC1	JLOC1_4009.1	1881	8e-25	1676 - 1735	100	60 / 60	minus
Harvest21	ABC49540	756	3e-25	51 - 110	100	60 / 60	plus
Harvest35	U35_47944	756	3e-25	51 - 110	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_47944 756 Hv_44K_v2
CGCTAGTGCTCCAACACTCCCTCCGTCAGGAATTACTTTGTCGCAGAAATGGATGAAAAT
GAATGTATCTGGTGGGAGAACACTGGATAATAACACGTAGCACATCCAACTAGTATATAT
ACTGGGACTGGGGTCATTTACTTTAGTTTAGCCTCTCATGACAGCATCAAGAGACATCAT
CCAGTCTAGTATATGTATGTGTCTGGGAGCACTTATTAACATTATATGAACAAGTAAAAA
AGAAATTCACATGCTTTCGGTACGATTTCTTATTTCATCCTCAAGAAGAAAAAACTCCTC
CCCATGCGCCGGCCGGCGGTCTAGAGTTTGGACGACTGCTCAACCCCGGGATATTCTTTG
CGCCATGTCTTGTGGATGTGTGTTACCACGCAACCCCCAGGGTTTTCAGGCTTTACACTC
AGCGCAAGAGTTGTAAAACTGGGTGCTGATCGTATAGCTGCAAATGGTGACACGGCCAAC
AAGATTGGTACATACAACCTCTCGATTGCTGCAAAGCATCACGGCGTGCAGTTCTACGTG
GCAGCGCCAGTAACTTCGATTGATCTCTCCCTCCCATCTGGGAAGCAAATCGTCATAGAA
GAAAGATCTCCCAAAGAATTGTTGAACTCTGAAGGTGGTCTAGGAAAGCAAGTTGCCGCG
TCAGGTATATCAGTCTGGAACCCCGCCTTCGACGTTACTCCAGCAGATCTAATTACTGCA
ATCATTACAGAAAAGGGTGTGATCACAAAGTCTGAT

Homology of Contig U35_47944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11050.1	509	1e-59	protein\|initiation factor 2 subunit family domain containing protein, expressed
Brachypodium v1_2	Bradi4g22150.1	369	2e-61
Arabidopsis v10	None