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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_33280_PI390587928Hv_44K_v2ACGATGCAACTAATGTAATCTGCTCCTGGCCGCCTGTTAATATGTTTTCGTAAGTAGCGG6GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 6.5303.8611.1610.9640.5390.485
Raw 308.126292.10176.18599.84719.29919.870



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_330727193e-257 - 6610060 / 60minus



Contig Sequence (719 bp)

>U35_33072 719 Hv_44K_v2
GAGCGGCCGCTACTTACGAAAACATATTAACAGGCGGCCAGGAGCAGATTACATTAGTTG
CATCGTGGTTTCAGCTCCAAACTTACCAGCCTGAAGAAAAAACATGTACCCTACTTCAAC
GTCTCTCTATCATAATATACCATCTCACTCTCACCCTCACCTCGCCGTATACGCAATTAT
CCATATTGTTCTTCTTAATTTGCACCTCGATTACTTGCAACCAGCTTCCCAGCGTCATAG
GTTCTTGCTCGTTCTGTTCATGGATGTCATGTTCGTGCAGCGGCCGCTAGCATGCATATC
AAGTGTGGTATAAGTAGTCCAGTTGGCAACGACGGACTCATCAGCAGTCATCTGGTTCAA
GACTCGTTCCATTGCATCAGCATCTTTCATGGCTGCACAACACTTTATCCAAATGTTGTA
AGTGCAGACATCAAAAGAGATATTTCTTTGCTTCATCTCATCAGTAACTGTAGACACTTT
CTCAGGCTCAGCAACATCCACGTAAAAATTCATCAACACATTAAAAGGTAATGTGTCAGT
TGCAAACCCCTTTTTCCTCATTTGCTCAAATGTGTATTCTGTTTTCTCTTTCATCCTAGC
TTGGGCATAAACATTGAGAAGAGACCCATATGTTCGCTTGTCTTTCAGTGGGTCAGGAAG
TTTTTCAAAGTATTCTTCAGCATCTGGAACACCACGCACTTTTGCAATCAGATCCAACT



Homology of Contig U35_33072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g46010.15123e-75protein|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2Bradi5g17360.15145e-80
Arabidopsis v10None