barSeed - Barley Seed Development Database

Probe CUST_33272_PI390587928

Source Contig U35_7903

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33272_PI390587928	Hv_44K_v2	AGGTCAAGCTCACCCGGGACAACATCAAGGCGTTCATCCTCGACATCTTCACTGCCGGAT	898	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58102.2	1395	2e-24	626 - 685	100	60 / 60	plus	ABC39971
MLOC	MLOC_58102.1	2940	2e-24	1799 - 1858	100	60 / 60	minus	ABC39971
JLOC1	JLOC1_37717.1	1999	8e-25	915 - 974	100	60 / 60	plus
Harvest21	ABC16004	1025	3e-25	899 - 958	100	60 / 60	plus
Harvest35	U35_7903	1027	3e-25	899 - 958	100	60 / 60	plus

Contig Sequence (1027 bp)

>U35_7903 1027 Hv_44K_v2
GAAAAAGTCAGAAGAGGAGGCATCATGGAGCAATTCGGAGTGGTCTCGGACAGTGCAGCG
CCACTGCTTGTGGCCTCGCTCCTCGCCGCCGTGGCCTTCTTCCTCCTCACGCTGGTCAGA
CATGGCGGCAAGCACGGCCGCCTCCCCCCGGGCCCCATGGCGCTCCCCTTCATCGGCCAC
CTCCACCTCATCCGCCCGCCCCCCCACCGCGCGTTCGACCGCATCATCAACCGCTACGGC
CCGCTCGTGTACCTCCGCCTCGGCCCCTCCACCCACTGTGTCGTCATCGGCTCCGCCGAC
GTCGCCCGCGACGTCCTCAAGTTCGAGGGCAGCATCCCGGAGCGCCCGCTCACGGCGGTC
ACGCGGCACCTCGCCTACGACTCGGCCGGCTTCGCCTTCGCGCCCTACGGCCCGCACTGG
CGCTTCATGAAGCGCCTCTGCATGTCGGAGCTGCTCGGCCCGCGCACCATCGAGCAGCTG
CGCCCCGTCCGCGCCGCCGAGCTCGTTGGCGTCATGCAGGCGGTGACCGAGGCGGCCGCC
AAGGGCGAGACCTTGGACATGAGCAGGCAGCTCGTTCGCATGTCCAACAACGCCATCATG
CGGATGGTGGCGAGCGAGCTGCCGGGCGACATGGCCGACGCGGCTCGGGACTGCGCCAAG
AAGGTGGCGGAGCTGGTGGGCGCGTTCAACTTGGAGGACTACGTGGCGCTGTGCCGCGGC
TGGGACCTGCAGGGGCTCGACCGGAAGACGCGCGACGTGCGCGCCAGGTTCGACGCGCTG
TTCGAATCCATGATCAAGGCCAAGGAGAAGCAGCGGCGTGAGGAAGCAGACGAGACCGAG
ACCAAGACCAAGGACTTGCTTGACATTCTCATGGACGCGGCGGCGGACCCGGCCGCGGAG
GTCAAGCTCACCCGGGACAACATCAAGGCGTTCATCCTCGACATCTTCACTGCCGGATCG
GACACGACGGCCACCACCGTGGAGTGGATGCTGGCAGAGCTGCTCAACCACCCGGACTGC
CTGCAGA

Homology of Contig U35_7903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01250.1	519	2e-149	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi2g48450.1	517	7e-162
Arabidopsis v10	AT5G06900.1	507	2e-56	\| Symbols: CYP93D1 \| cytochrome P450, family 93, subfamily D, polypeptide 1 \| chr5:2136160-2137925 REVERSE LENGTH=507