barSeed - Barley Seed Development Database

Probe CUST_33271_PI390587928

Source Contig U35_45052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33271_PI390587928	Hv_44K_v2	AATGCCTTTCCTGTAAGAACCGAAGTGCTATATTGTTTGAAAGGAACTTTTGCGATGAAA	14	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.004	1.658	1.127	0.858	0.382	0.438
Raw	4188.460	5481.320	3253.680	3943.490	612.820	757.334

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74447.1	2001	9e-22	1883 - 1940	98	57 / 58	plus	ABC08622
JLOC1	JLOC1_49607.1	1988	5e-22	1868 - 1925	98	57 / 58	plus
Harvest21	ABC43430	628	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_45052	628	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (628 bp)

>U35_45052 628 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATCGCAAAAGTTCCTTTCAAACAATATAGCACTTCGGTTCTT
ACAGGAAAGGCATTGTCGTATATTCCTCATAAAATTTAAATGTGCTACATCAAGGCGACA
GATAATCGACACACAAAAATTGCATGGAAAAAAAAAAGGCAAAACACTTGGACGCTGACA
AAATTGCTTGGTGACAGGAAAAGTTGCGGACCGCTAATTTGGCTGCCCGTCCATCATGAT
TAACCGCATAAGTAGAAATGAATATTGCTATCAGGAGTGATTCTTGTCCATTAATTGTCT
TACCAACTTAGGCACTGCCTGTCCACTCCCCTGCAACCGTGTGACAAGCTGTCCTGGTGA
GGATCTCGACATAATCGTCAAACGATGGAGGCAAGTCCGCGACCAACACAATCTCAAATT
CCTCGACACCTGATGTTGCCAAGCTCTCACAGCCTTTCACAAGTACATTGATAAGCCCCA
TGCTGCTGCATACGGTAAAGGTGCTGCCTTGCGAGCCATCATTCACTGTGAGAATTTCCA
GTTTGAGGGATGAAAAGAGTTTCTGCGCTACATTATCATTCGCGGCTACTAGCAAAACCT
TTGCTGTCTTACTAGCATGGTTTTCTAA

Homology of Contig U35_45052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None