barSeed - Barley Seed Development Database

Probe CUST_33269_PI390587928

Source Contig U35_7905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33269_PI390587928	Hv_44K_v2	GGTTTGGCTTTTGGATGTCAAAATGTGACAGATTAGAAGCATTATTTTTCTACCGTTTGA	495	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.598	1.204	1.942	1.218	0.748	0.840
Raw	172.581	528.795	767.862	713.894	162.389	198.227

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354249	3881	2e-24	3695 - 3754	100	60 / 60	plus	ABC48448
MLOC	MLOC_52166.3	2299	2e-24	2173 - 2232	100	60 / 60	plus	ABC48448
MLOC	MLOC_52166.1	4031	2e-24	3861 - 3920	100	60 / 60	plus	ABC48448
JLOC1	JLOC1_33388.1	3902	8e-25	3730 - 3789	100	60 / 60	plus
Harvest21	ABC48448	370	3e-25	17 - 76	100	60 / 60	minus	ABC48448
Harvest35	U35_7905	571	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_7905 571 Hv_44K_v2
CCACGCGTCCGGGGGACGACGACGACGCGGCGGCGGAGCGCGTGGTGGACCCGGCCCTGC
GCGGCGAGTTCCCGGAGGAGGAGGCGCTGCCGGTGCTGAAGCTGGGGGTGGTGTGCACGT
CGCAGATCCCGTCGAACCGGCCGTCCATGGCGGAGGTGGTCCAGATCCTGCAGGTCATCA
GGGCCCCATCGCTGCCCGGATGCACGGCGCAGCTTTTCTGACACGTCAATGCACGTACCT
GCCAGCGGGCTCGATCGACGACCAGCCAGAGGTAGGGGAGGGAGATCCACTGATTGGCAT
GCAGTTGGACGTACCGTGTCCATGCATGCATGCATAGATCCGCGAGTAGTACGTGCCGGC
GTGCATTGATGCTCTTCATTGTCTGTGTTCGTGTCACGTGTTTGCTAGTGAAAATTAATC
AGGTGTTAAGGTCCCGGCATGCACCGGAGTTTTGTACAGTGTGTCGTGCTACATTTTTTT
TTCTTTTTTGCTTTTGGTTTGGCTTTTGGATGTCAAAATGTGACAGATTAGAAGCATTAT
TTTTCTACCGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None