barSeed - Barley Seed Development Database

Probe CUST_33268_PI390587928

Source Contig U35_7906

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33268_PI390587928	Hv_44K_v2	TTGTGCTTTGTTTTCTTTCTACGATGAGCTGTGCACGAGAGGTTTCAGTTTTCCCTTCGC	466	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.250	3.193	1.400	0.605	0.312	0.278
Raw	92.034	108.232	43.278	31.411	3.232	3.293

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38604.1	1554	2e-24	13 - 72	100	60 / 60	minus	None
JLOC1	JLOC1_25119.1	1548	8e-25	1475 - 1534	100	60 / 60	plus
Harvest21	ABC19138	524	1e-23	415 - 474	98	59 / 60	plus
Harvest35	U35_7906	576	3e-25	467 - 526	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_7906 576 Hv_44K_v2
AGAAGTTCATGAAAGTCATGCTTAATAAGTTCCATGAAGGTGGATCAGGTGATCAAGGTG
GTGTCATGGGCATGGTTGGTGCCCTAGCTCACGAGTTCCTGAAGGCAAAGCTTGATGGCA
ACGAGGAAGAGACTTTCAAGCCAGCAATAGAACAAGATATGGGCAGTAAAGAAGAGGCGT
ATGCCGGGACAAAGTCATGGGCGCCTAACAACGGCATCCTCATCAGTGGGTGCCAAACCA
GCCAGACATCAGCAGATGCAACCATACCGGGGGGTACCTCCTTCGGTGCGATGAGTAATG
CCATCCAGGCCATTCTTGCGAGCAATGATGGAAAGATAACAAACAAGGATCTCGTTATGA
AAGCACGAGCATCGCTGTCCAAGCAAGGATACACTCAGCAGCCCGGGCTCTACTGCAGTG
ATGAGCATGTTCATGTGGCTTTCATCTGCTGAAGCATGGATTGATGTTGTGCTTTGTTTT
CTTTCTACGATGAGCTGTGCACGAGAGGTTTCAGTTTTCCCTTCGCCCCCCCCCCCCCCC
TTTTTCCCCGGGGGGGTTGGGGGGGGTTTTTTTTTT

Homology of Contig U35_7906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58580.1	418	4e-65	protein\|ICE-like protease p20 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g52470.1	429	2e-72
Arabidopsis v10	None