barSeed - Barley Seed Development Database

Probe CUST_33265_PI390587928

Source Contig U35_7908

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33265_PI390587928	Hv_44K_v2	AACATTCGCTTTGACAATTCTTACAGAACTATGCCACGCATGAACGCTGGTGAACAAGGC	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22169.1	955	7e-23	339 - 399	98	60 / 61	plus	None
MLOC	MLOC_22169.2	772	7e-23	296 - 356	98	60 / 61	plus	None
MLOC	MLOC_22169.3	777	7e-23	296 - 356	98	60 / 61	plus	None
MLOC	MLOC_22169.4	564	7e-23	168 - 228	98	60 / 61	plus	None
JLOC1	JLOC1_15363.1	616	4e-23	361 - 421	98	60 / 61	minus
Harvest35	U35_7909	633	1e-23	472 - 532	98	60 / 61	minus
Harvest35	U35_7908	718	1e-23	578 - 638	98	60 / 61	minus

Contig Sequence (718 bp)

>U35_7908 718 Hv_44K_v2
GACGGGATCCTCGCTCCGACGATCCGCCGCGCCACCCCTTGCCCCCCCTCCACCCCCACC
CCATCCCAAACCCACTACCGTACGTCGCCGTCGTCACCATCCACCTCGACCCCGTCTCCC
CTTACTCCCTTCTCGGCCATAAAGGGCGCCGCAATGGCCGCCGCGTAGGCCCCCGCGCGC
GGGCAGCCTGATGGCCGATGGCAGCGACGGGGAGGGTGCGGGCGAGAGCTGCTGGCCGGC
CCCCGCCGCCACCGCCTCCGGCCAAGGCAGCGGCGGCGGCGGGGTGCAGCTGTCCGGCGT
CAGGAGGGAGATCTACGACCGCCTGCGGGCCATCGGCAACCAGGAGGCGTTCGCCGACCC
CTTCTTCGACCGCGTGCTCGAAGACCACTACTAACGCCTCCCGCCAAGCTACTACATCGA
CCTCGACGTGAGCATGGAAGCCAGGGATCCCCCACAATTACCGTTTTGATTTGGAGCCAG
AGGTTTGTCCTGCTGAAGGAATCGGGCATGGAAGACGGGGCGGTTGTCGGGGTCGGCGCA
CTCGGCGAGGATCCGGCGGTGGAGCAACACGTCCTCCGCCTTGTTCACCAGCGTTCATGC
GTGGCATAGTTCTGTAAGAATTGTNCAAAGCGAATGTTTGATTAAAAACAGATATCTCAG
TCATCTATGCCAGCTGATAGTCAGTTTGTATTGCTCTGATTTATGAGCTCTACAGAGA

Homology of Contig U35_7908 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None