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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_33258_PI390587928Hv_44K_v2ATTAATGTTCTTTTATGTCCACTGTCCGAGGAAATGCTAATGATGCTTCAATGGATGTCG821GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2741.8161.2600.7290.2010.196
Raw 1787.8032293.2541358.9401245.482122.180127.196



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_53327.117982e-241548 - 160710060 / 60plus ABC15564 ABC44131 ABC44152
Harvest21ABC155648843e-25822 - 88110060 / 60plusABC15564
Harvest35U35_79108843e-25822 - 88110060 / 60plus



Contig Sequence (884 bp)

>U35_7910 884 Hv_44K_v2
GGCAAAGGGTGCTAAATTGAAGGGGAAGGAGGATGGTACAAAGCGGAAGCGTGAGGATGA
CACAGAGGGTAAGGATGGGAAGAAGCACAAGAAGGAAGGGGAAGAGAAGGCACCAGATAT
CATGTATGGCAATGTGTTGGTCGATCCAAAGGAAGCAAGGCGGAGGAAGAAGAGGAGGGT
CAAGAACAAGAAGAAGGAGCTGGAGCAGGCTAAGCGGATGCAGCGGGCAAAGGAGGATCC
TAAAAAGGCCACCAAGATGGCCTGGGATGTGGCAACAAGGCGCGCAGCTGGGGAGAAGGT
GCACGACAACCCCAAGTTGATTAAAGAGAGCATGAAGAAGGATAAGAAGAGGCAGCAGAA
GCACGCAGATGAGTGGAAGGACAGGCAGAGGACCGTGGACATCAAGAAGAAGCAGAAGCA
GAATAAGCGGAAGGAGAACATCCAGGGCCGGGCAGAGGAGAAGAAGGCGCGCAAAATAGA
GAAGCGCGAGAAGAAGCTTATGCGCCCTGGTTTCGAGGGGCGCAAGGAAGGTTATGTCAA
CGAGTGACATCTACATTGAAGATGATGATGAGTGAGTACTGTGTCTGCTTTATGTTTGTA
AGGTTGCATATGTTGGTGTTGGTGTTGGTACTGGAAATAGGTATCCAGATCATGACTACC
ATACTTAATTATAGCTGGAAGGTCGAATGTTTGGCAGGTCATCTGAAAAAGATTTTGAGA
TATTCCTTTTGATGTGTTTTCATTGAGCTTAGATTAAATTGTTGAGGAACAAACTTTTAT
GTCTAGCTTCATAGCTATCTCTAGCACTAGACCGAGGAAATATTAATGTTCTTTTATGTC
CACTGTCCGAGGAAATGCTAATGATGCTTCAATGGATGTCGTTC



Homology of Contig U35_7910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g10600.13967e-59
Arabidopsis v10None