barSeed - Barley Seed Development Database

Probe CUST_33257_PI390587928

Source Contig U35_7911

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33257_PI390587928	Hv_44K_v2	TTTAAGTGTGACCATCAGCACAGTCGTCGTCGTCGTCGAGATGGTTGGGAGCAGCCCGAT	93	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60174.1	1548	2e-24	163 - 222	100	60 / 60	plus	ABC31185
JLOC1	JLOC1_39218.1	1705	8e-25	202 - 261	100	60 / 60	plus
Harvest21	ABC15502	620	3e-25	94 - 153	100	60 / 60	plus
Harvest35	U35_7911	620	3e-25	94 - 153	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_7911 620 Hv_44K_v2
CGCCAAGAAGCATTCCCCCGAGCCAGCGATCTTCTCGCCGCATTCCACACTGTTGTCCGT
GCACGTGCGCCGGCCCGAGCTAGGCTCTCATTGTTTAAGTGTGACCATCAGCACAGTCGT
CGTCGTCGTCGAGATGGTTGGGAGCAGCCCGATGCAGGCGGTGCTGGTGGCGCCGGGGGT
GAAGGACAAGAAGGTGCTGGCGTTCAGGCGGGACGCGCTCAAGGAGAAGGACGCCGTATC
CGCGCTCATGCGCACCATCGCGGCCGGCGGCGTGCGGAGCGCCTTCTACGTCTTCGACCT
CGCCCGGGTCGTCGACCTGTACCGCGGATGGCGCCGCGCGCTCCCCGGCGTGCGGTCCTG
CTACGCCGTCAAGTGCAACCCGGAGCCGGCGCTGCTCGGCGCGCTGGCCGCGCTCGGGGC
GGGCTTCGACTGCGCCAGCCGCAGGGAGATGGAGGCCGTGCTCGCGCTCGGCGTGCAGCC
CGGCAGCATTGTGTACGCCAACCCGTGCAAGCCCGAGGCGCACCTCGAGTACGCCGCTGA
GGTGGGCGTCAACCTCGCCACCTACGACTCCGAGGAGGAGGTGGTCAAGGTGAAGCGCTG
CCACCCGGGCTGCGAGCTCA

Homology of Contig U35_7911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37120.1	409	4e-73	protein\|pyridoxal-dependent decarboxylase protein, putative, expressed
Brachypodium v1_2	Bradi4g36810.1	404	1e-82
Arabidopsis v10	None