barSeed - Barley Seed Development Database

Probe CUST_33255_PI390587928

Source Contig U35_45061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33255_PI390587928	Hv_44K_v2	CGAGGCTACTATTAATACCCACTTGGGGGTGAACCGGTGCTCAAAGATTACTGTAAAAAA	38	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18742.1	656	3e-21	103 - 162	97	58 / 60	minus	ABC10607 ABC43453
JLOC1	JLOC1_12981.1	619	2e-21	97 - 156	97	58 / 60	minus
Harvest21	ABC43453	192	3e-25	39 - 98	100	60 / 60	minus	ABC43453
Harvest35	U35_45061	192	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (192 bp)

>U35_45061 192 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTCTGAACACCGGTTTTTTTTTTTTTTACAGTAATCTTTGAGC
ACCGGTTCACCCCCAAGTGGGTATTAATAGTAGCCTCGTAGGTTAACTTAAAAAACCTCT
CTAAAGAAAGGCCGGGTTATAATATACTCCCTCTGTAAATTAATATAAGACATTTTATAT
CACTAATTAGTT

Homology of Contig U35_45061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None