barSeed - Barley Seed Development Database

Probe CUST_33251_PI390587928

Source Contig U35_45063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33251_PI390587928	Hv_44K_v2	CGATACGATGCGCGCCATGGTCGCGCTCGCGCGGCGGCCGGCGGCGGAGAGGTGGAAGAC	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366869	1947	2e-24	25 - 84	100	60 / 60	minus	ABC13198
MLOC	MLOC_75254.1	405	2e-24	318 - 377	100	60 / 60	plus	None
JLOC1	JLOC1_50194.1	343	8e-25	220 - 279	100	60 / 60	plus
Harvest21	ABC43455	168	3e-25	1 - 60	100	60 / 60	minus
Harvest21	ABC22152	538	3e-25	10 - 69	100	60 / 60	minus
Harvest35	U35_45063	168	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_12132	535	3e-25	10 - 69	100	60 / 60	minus

Contig Sequence (168 bp)

>U35_45063 168 Hv_44K_v2
GTCTTCCACCTCTCCGCCGCCGGCCGCCGCGCGAGCGCGACCATGGCGCGCATCGTATCG
CGAGCCCTTCCGTTCGCCTCGCGCTCGCACCTCCATATCCCACCGCCCTCCGCGGCGCGG
CGCTGCTCAGTTTTTTTTTTTTCCTCCCGCACCTCCCCGCGGCGGCGT

Homology of Contig U35_45063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None