barSeed - Barley Seed Development Database

Probe CUST_3324_PI390587928

Source Contig U35_47821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3324_PI390587928	Hv_44K_v2	AGGCAAGGATCGCGATGTACAAGGCCTGCGACTTCATGTGCAGCGACTCTGCTATTGTCG	101	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63510.1	2817	2e-24	851 - 910	100	60 / 60	plus	ABC09571
MLOC	MLOC_63510.2	2122	2e-24	722 - 781	100	60 / 60	plus	ABC09571
JLOC1	JLOC1_41605.1	1781	8e-25	995 - 1054	100	60 / 60	minus
JLOC1	JLOC1_41606.1	2497	8e-25	739 - 798	100	60 / 60	plus
Harvest21	ABC49286	255	3e-25	102 - 161	100	60 / 60	plus
Harvest35	U35_47821	255	3e-25	102 - 161	100	60 / 60	plus

Contig Sequence (255 bp)

>U35_47821 255 Hv_44K_v2
CGGCCATGGCACGCACGTGTCGTCCACGGCCGCCGGCTCTGCGGTACGTGGAGCCAATTA
CAAAAGCTTCGCACGCGGCAACGCCATGGGCATGGCGCCCAAGGCAAGGATCGCGATGTA
CAAGGCCTGCGACTTCATGTGCAGCGACTCTGCTATTGTCGCCGCGGTCGACGCCGCGGT
CACCGACGGCGTGGACATACTGTCCATGTCGTTGGGAGACTCGGACGCCCCGCCTCCTTT
CTACGAGGATGTGGT

Homology of Contig U35_47821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None