barSeed - Barley Seed Development Database

Probe CUST_33248_PI390587928

Source Contig U35_7918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33248_PI390587928	Hv_44K_v2	TCAGTGCTCAGTGTTGAGTTCTACTATTGCAGTGTGTGAAATGGATTATCTTCATATGTA	828	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.009	1.226	1.649	1.533	0.591	0.464
Raw	513.564	1008.649	1146.950	1683.775	229.917	193.938

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15570.1	1438	2e-24	1135 - 1194	100	60 / 60	plus	ABC15449
JLOC1	JLOC1_10693.1	1409	8e-25	1186 - 1245	100	60 / 60	plus
Harvest21	ABC15449	559	3e-25	484 - 543	100	60 / 60	plus	ABC15449
Harvest21	ABC15450	886	5e-23	828 - 886	98	58 / 59	plus
Harvest35	U35_7918	904	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_7918 904 Hv_44K_v2
ACTTCTACAATTTTGATGCCGACCGCGTCGAAAAGTGCTTCAAGAGAGGCCAGGTATGGG
CATTGTATGGGGACGACGATGGCATGCCGCGGCACTACGCGCTGGTGGAGATGGCATCGC
CGGGCAGGCAGTTCCGCGCACAGATACGGTGGCTGGAGCACCAGCCTGACGGGAAGGAGG
GGAAGCCATGTGGGTCGTTCAAGGTGGGGAGAGAAGCCATGGTGCACTCGGTGAATGTCT
TCTCACATCTTGTTGCCTGTGAAAGGGTGGCGAGGGAGAAGTACCGTGTTTACCCCAAAA
AGGGGTCAGTCTGGGCGCTCCATGCCGGAGAGTACGCCGACACCGGGAGGCCCAAGTATG
ACTTTGTGGTGTTCCTCAGCGGGTACAGTAACGTGCACGGCATTAGCTTTGGCTACCTGG
ACAAGGTTGAGGGTTTCAGGAGCATCTTCACGCGCCGCGAGATAGGTGTCCATGCCATTC
AGTACCTCCGGGAGGGCGATGTTGGGATGCTTTCGCATCAGACACCAGCAAAGAAAGTCT
CCAAGGGTGAGTCCTCGGCACTGCCTCCTGGGGATTGCTGGGAGCTTGACCCTGCATCTT
TGCCTGCTGAATTACTGCACGCCTAAAGGCACAAGTGGCTTCGGAGTGATAATGCTGACA
GGGCCGTTAGGACTGTTTAGGTTCCAAGTTGTGTATTAGTAGGGGAAGATGATCATTTGG
ATGGTGTCAGATGATGTGATGATGCTTCTATTTGAAAACTCTAGATGGATATTGGTCTTC
TTCAAGTGGAGACTTTGAAATCATGGATGATTGTGGCTGTTTCAGAGTTCAGTGCTCAGT
GTTGAGTTCTACTATTGCAGTGTGTGAAATGGATTATCTTCATATGTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_7918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02170.1	479	2e-114	protein\|DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g50190.1	454	2e-113
Arabidopsis v10	None