barSeed - Barley Seed Development Database

Probe CUST_33240_PI390587928

Source Contig U35_33095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33240_PI390587928	Hv_44K_v2	CCTATGGTTTACCCCCTTAAATCTGTCATCGAAGAAATCCAAAAGTCTGCAGAGGAGAGT	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51413.1	5824	2e-24	216 - 275	100	60 / 60	minus	None
MLOC	MLOC_51413.2	2244	2e-24	165 - 224	100	60 / 60	minus	None
JLOC1	JLOC1_32843.5	5210	8e-25	4987 - 5046	100	60 / 60	plus
JLOC1	JLOC1_32843.4	5679	8e-25	5456 - 5515	100	60 / 60	plus
JLOC1	JLOC1_32843.3	5637	8e-25	5414 - 5473	100	60 / 60	plus
JLOC1	JLOC1_32843.2	5486	8e-25	5263 - 5322	100	60 / 60	plus
JLOC1	JLOC1_32843.1	5475	8e-25	5252 - 5311	100	60 / 60	plus
Harvest35	U35_33095	717	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (717 bp)

>U35_33095 717 Hv_44K_v2
TCCACTCTCCTCTGCAGACTTTTGGATTTCTTCGATGACAGATTTAAGGGGGTAAACCAT
AGGAGTATTTCCAGAACCAGTGAAATCCCTAACCTGCTTATTTAAAGTATTCAGAAGCAA
CTCCTCAATAAAGGTATGTTTGTCAGCAGATGACAAGCCAAGGTCGGCTGGCATAATGTC
ACGCAGGAGATTATGAGTGTATGGATCTATGCCGTATACTTCTTGCTCAAGAACTTCATC
CCCAGGTACCTTTCTACGTTGATAATCCTTAACCTCTGGAATCTCCAAATTTTCAGTGCC
ATTTTTCTGTGAGAGCAGCTTCTCAGAGTAGTCATCAGGTAAAGCAACCCGCATTTTTCG
TTGTACTTCCTCCAGCGGCCGCTCATGAACACGGTTACATGACAAAAGTTAAGAGTTCGG
CACATTACAAAGGTACAACACTACTAGAAATATACTCGTACAAATGAACAATGTGTTGTA
GTTCGGATTTGCGAGTAAGAACCTGGGACATATTATGAGGGGGAACTGCCATCAGCATTG
TTCTTCTTCTTATGGTGGAACATTCCTGTGATGCTAGGCAGCATGAAGCTCTTCCGCAGT
AGAGCCTTGCTGTTCTTCTGATGTCCGTTGCTCTTCTCATTGGCTCGTGCGGCAGAAGCC
TTCTGAGATGGAGCGTCCGCCAGTGATGTAGCTCCCGGCGGAAGCGCGTAGGTCTCG

Homology of Contig U35_33095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08210.1	936	2e-65	protein\|SET domain containing protein, expressed
Brachypodium v1_2	Bradi3g15410.1	2244	6e-69
Arabidopsis v10	None