- Probe CUST_3323_PI390587928
- Source Contig U35_11893
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3323_PI390587928 | Hv_44K_v2 | GAGCCTTAATTTGCTCGGTTTGTATCCATCTTTCTCAAAATTTGTTGAGAGTTTCTCAAA | 502 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.943 | 1.771 | 0.957 | 0.887 | 0.740 | 0.659 |
| Raw | 65.359 | 26.214 | 12.008 | 18.320 | 3.362 | 3.306 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62978.1 | 2904 | 6e-24 | 2757 - 2815 | 100 | 59 / 59 | plus | ABC35365 |
| JLOC1 | JLOC1_41240.1 | 2882 | 3e-24 | 2752 - 2810 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC35365 | 569 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus | ABC35365 |
| Harvest35 | U35_11893 | 589 | 3e-25 | 503 - 562 | 100 | 60 / 60 | plus |
Contig Sequence (589 bp)
>U35_11893 589 Hv_44K_v2 GAGGGTACGAGGACGTTGAGGCGTCGGGCAAGGAGGAGGTGGTGCAGGCGATCAACTCGC TGTCCAAGTCCAACATGTTCGTGGTGGGGAGGATGCCGCCGACGGAGCCGCTGGTGGAGA GGCCCGAGGAGCTGGGCCCCGTGGGGAGCTACCTGGCGTCGTCGGAGTTCAAGACGTCGG CGTCGGTGCTGGTGATCAAGAGGTACGACCCGGCGACGAACCCGGCCAGCAAGAGGTTCG ACCCCAAGGCGAGGCCGCCGGTGGCGACGGACGTGGAGGACGAAGAGATGGGCGGCGCCA GCGCCAGCGCCACCGCCAGCGTGGTGCCCGTGCCGTGGACGCCGCAAAACGACCTGGCGT GAGCTGGTTCATGGAGCTCCGGCCGGCCGGCATCGTGGCCGTCAGACGTGCTTGGTCTCG TACGTGTTGGTTGTGAGTAGCGACGCGATGAAGTGTACATAGTGTGCTGTTGTGTAGTGC GTACGTGTTGCTGCTGTGCGTTGAGCCTTAATTTGCTCGGTTTGTATCCATCTTTCTCAA AATTTGTTGAGAGTTTCTCAAAAAAAAAAAAAAACTCGCAGGGGGGGCC
Homology of Contig U35_11893 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |