barSeed - Barley Seed Development Database

Probe CUST_33231_PI390587928

Source Contig U35_7925

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33231_PI390587928	Hv_44K_v2	GGTACAGTACAGAAACGCTGGGGTGATCCACGTGTGAGAACGATACCCCGATCTGTAATG	985	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.026	2.440	1.265	0.891	0.408	0.373
Raw	3129.527	5895.817	2589.490	2801.550	461.448	462.715

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_7925	1045	3e-25	986 - 1045	100	60 / 60	plus

Contig Sequence (1045 bp)

>U35_7925 1045 Hv_44K_v2
TCCCCCGGGCTGCAGGGCCCGCTGGTCACCATCGGCAAGGTCCTGCTCGCGGCCGCGTTC
GCGCGCCGCGGGGGCACGCAGAGCGCCAGCAACGGTGCCGTCATTGACCGCGCGCCCAGC
CCGACGGGGAGCACCGACATGAAGGAGTACTGCAAGCCCGGGGACGCAGGCGCTGCTGAC
GAGGTGACGGAGCCGTCCCAGGAGCTGAGTGTCTTGAACCGAGCAGTGCAGTGCCAGCCG
CGGCACAGGGCCCTGGCGTGCACGGTGCAGGAGGTGGAGGACGTCAAGATCGTGCTCATG
GTGCTCCCCATATTCCTCTCCACCATCATGCTCAACTGCTGCCTGGCCCAGCTCTCGACC
TTCTCCGTGGAGCAGGCGGCGACGATGAACACCCACGTCGGGCGGCTCAAGGTGCCGCCG
GCGTCGCTGCCGGTGTTCCCCGTCACGTTCATCATACTCCTGGCGCCCATCTATGACCAC
ATCATCGTCCCGTTCGCGCGACGAGTAACCGGGACGGAGATGGGCATCACCCACCTCCAG
CGCATCGGCACCGGGCTGGTCCTCTCCATCGTGGCCATGGCGGTGGCCGCGGTCGTCGAG
GTGAAGCGGAAGAACGTGGCCACCGACGCCGGCATGACCGACTCCGGGGCGCCGCTGCCC
ATCACCTTCTTCTGGATCGCGTTCCAGTACCTGTTCCTGGGGTCTGCGGACCTGTTCACG
CTGGCGGGCCTGCTGGAGTTCTTCTTCAGCGAGGCGCCGCCGAGGATGCGGTCGCTGGCG
ACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCCGTGCTGGTGACG
GTGGTGAACAGCGCGACGGGGCGCGGCGGGCACCGGCCGTGGCTGGAGGGGGCGAGCCTG
AACCACTACCACCTCGAGCGGTTCTACTGGCTGATGTGCGTGCTCAGCGCACTCAACTAC
GTCTTCTTCTTGGTGCTGGCCATCCGGTACAGTACAGAAACGCTGGGGTGATCCACGTGT
GAGAACGATACCCCGATCTGTAATG

Homology of Contig U35_7925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38294.1	591	6e-170	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi1g37330.1	585	1e-166
Arabidopsis v10	AT1G69850.1	585	1e-112	\| Symbols: ATNRT1:2, NTL1, NRT1:2 \| nitrate transporter 1:2 \| chr1:26296945-26300407 REVERSE LENGTH=585