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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_33228_PI390587928Hv_44K_v2TTAAAACCTGTTACCGTCGTGCTGAAGAAATTAATTCATGGACCGCATCTCACTAAAAAA477GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3251.7190.9650.9300.4240.498
Raw 813.7171679.199816.6351264.818196.546253.843



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_39957.126909e-22123 - 17710055 / 55minus ABC17325
JLOC1JLOC1_26102.29315e-22830 - 88410055 / 55plus
JLOC1JLOC1_26102.18825e-22781 - 83510055 / 55plus
Harvest21ABC359875433e-25473 - 53210060 / 60plus
Harvest21ABC315174143e-25349 - 40810060 / 60plus
Harvest21ABC173255433e-2512 - 7110060 / 60minusABC17325
Harvest35U35_79275483e-25478 - 53710060 / 60plus



Contig Sequence (548 bp)

>U35_7927 548 Hv_44K_v2
AGCTGCGGCCAATGACGCAGAAGCTGCGGACAACGACGCAGAAGCTGCCGCCAACGATGC
GGAAGCTGGGGCCAATGAAGAAGCTGTCAACCAAGACCAAGACATGGGCGATGAGGCAGA
GGAGGATGAAACTGAGGAGTATTTGATCGAGGAACAAGCGGGTGCGAGCCACGGGCAAGC
TCTGGCCAGGGACGTGGATATGGAGAACGAGCTCGCCAACGAGCTGACGGGTGATGCCCT
GGATGACTATGACATCGACGTCGCCAACGAAGGGCAGGCCATCGCGGAGTACCTGAGCCT
TCTGGAGTCCGCTGCTGCTGCTGCTGCGCTAGCTCTTGATTTGCAGAGATATATAGGCAT
CTTAAAAAGCTTCAGGTGGAAGGAGAATAGCCTCAGCCCGGGAGCTCGTTTGCGTGGTAG
GGTTCGATTCTGTACATACGAATATGGTGCTACCTTTAGTGAGCTATAAGTGACACGTTA
AAACCTGTTACCGTCGTGCTGAAGAAATTAATTCATGGACCGCATCTCACTAAAAAAAAA
AAAAAAAA



Homology of Contig U35_7927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None