barSeed - Barley Seed Development Database

Probe CUST_33226_PI390587928

Source Contig U35_7928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33226_PI390587928	Hv_44K_v2	AGATTACTCTGATCCCTCTGTCGACGATACTAGAAACCATACACATGTCAATCAAAGCAG	267	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62319.5	4068	7e-23	3426 - 3485	98	59 / 60	plus	ABC16951 ABC44097
MLOC	MLOC_62319.2	4308	7e-23	655 - 714	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.6	4397	7e-23	499 - 558	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.7	3793	7e-23	407 - 466	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.4	4261	7e-23	648 - 707	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.1	2611	7e-23	655 - 714	98	59 / 60	minus	ABC16951 ABC44097
MLOC	MLOC_62319.3	2837	7e-23	650 - 709	98	59 / 60	minus	ABC16951 ABC44097
JLOC1	JLOC1_40777.2	4296	4e-23	3544 - 3603	98	59 / 60	plus
JLOC1	JLOC1_40777.1	4172	4e-23	3420 - 3479	98	59 / 60	plus
Harvest21	ABC16951	893	3e-25	567 - 626	100	60 / 60	minus	ABC16951
Harvest35	U35_7928	893	3e-25	268 - 327	100	60 / 60	plus

Contig Sequence (893 bp)

>U35_7928 893 Hv_44K_v2
GATAGACACAGCACCTTTTGCAACCTCCTCGGCAAATGTTGAACCCCAGTATGCGCCTAC
CCCAGAACCTGCTTTGCCACCGCAGGCTGCAGTGCCTGGAGATGCTGCTGATCCATCTGG
GTTTGCCCTGCCATTATTTGGAAATTCATGGTCAGATCCATGCATCGAGTTCGCATTCAA
GACCCTCACAGGCGACATCCCTGTTCTGAATCCAACTGTCGCGGACTACTTTCCTCTTCA
GCAAGACCTGAATAAAGTCGCACCACCAGATTACTCTGATCCCTCTGTCGACGATACTAG
AAACCATACACATGTCAATCAAAGCAGCCACCACTCGGCCCCAAGGCCATCAAATGAGTT
CTACAATGGTGGCTGGTTCCCTCCTCAGTGACGCCCTGGAAGGCTGAATGGACGAACCGC
TTGTGCTCGCAAAAAGGCTGATGTTCCGCTCGTACTTGCAAAAAGGCTGATGTTCCGCTT
GTACTTGCAAAAAGGCTGATGTTCAGAGAGGAATGCCCAAGTGATCGAGCTCGAAGCAGT
AGTCTTGCTTGCGCTCTTGCGTTTTTGTGATCCTTCTGCGATATATTTTGCAAAGGCCTG
TAGCTTTCTCTAACTTTGTTAGACAGTGTGTACATCCCACCGGATGCCTCTTGCCATAGG
ATCAGGATGGCTTCGTAGACGTGAATGCCGTTGTAGATGATCTAGCTGTGTTTTTTGTTT
TCTGTTTTATTTTTCTTCCTTTCTGTGTAGTTCGCCCGGTAAATCTCATTTGATGTATCA
TCAGGGCGGACTCGCTAACACACCGTTGCAAGCACCATAGTTTAACTATCTTTGCAAGTG
TTTCCGATATGTGGATAATAAATGTCTCTTGGATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g17857.1	1029	8e-53
Arabidopsis v10	None