barSeed - Barley Seed Development Database

Probe CUST_33224_PI390587928

Source Contig U35_45078

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33224_PI390587928	Hv_44K_v2	ATGTGTTCCGGCTGTTCACGAATTACGACCCGGTAGACAGACTTGGTGGCTGGGATCGGA	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376803	1053	2e-24	738 - 797	100	60 / 60	plus	ABC01661 ABC13588
MLOC	MLOC_14291.2	949	2e-24	309 - 368	100	60 / 60	plus	ABC07507 ABC13588
MLOC	MLOC_14291.1	424	2e-24	131 - 190	100	60 / 60	plus	ABC13588
MLOC	MLOC_14293.1	2013	2e-24	643 - 702	100	60 / 60	plus	ABC07507 ABC13588
JLOC1	JLOC1_9756.1	1247	8e-25	1075 - 1134	100	60 / 60	minus
Harvest21	ABC13588	1072	3e-25	789 - 848	100	60 / 60	plus	ABC13588
Harvest35	U35_45078	413	3e-25	348 - 407	100	60 / 60	plus
Harvest35	U35_6541	1072	3e-25	789 - 848	100	60 / 60	plus

Contig Sequence (413 bp)

>U35_45078 413 Hv_44K_v2
GACGCTCTACGCCTACCTCAAGAAGAGCAGCCCGGATGTGCCGGCGCGGCTGCTCGAGTA
CGACGAGCGGTTCGGGCAGTACGGCGACGACTTCGCCTTCTACGACTACAACCAGCCGGA
GGCGCTGCCGCCCGCCATGAAGCACGCCTTCCAGATCGTCGTCGCGGATCCTCCTTACCT
GAGTCAGGAGTGCTTGGAGAAGGTCGCCAAGACGGTCTCCTTTCTCGCGCAGCCTGAAGG
CTCATTCCTGCTGTTGCTCACAGGGGAAGTTCAGAAGGACCGCGCACTGGAGCTCCTAAA
CGTGCGCCCCTGCGGTTTCAAACCTCAGCACTCGAACAAACTGGGAAATGTGTTCCGGCT
GTTCACGAATTACGACCCGGTAGACAGACTTGGTGGCTGGGATCGGAGCGATG

Homology of Contig U35_45078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53890.1	242	7e-83	protein\|N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g08530.1	250	8e-86
Arabidopsis v10	AT3G58470.1	248	6e-59	nucleic acid binding;methyltransferases \| chr3:21627070-21628507 REVERSE LENGTH=248