barSeed - Barley Seed Development Database

Probe CUST_33223_PI390587928

Source Contig U35_7929

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33223_PI390587928	Hv_44K_v2	CTTTGCAAGTGTTTCCGATATGTGGATAATAAATGTCTCTTGGATACAATTTGTGGTCAA	467	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62319.2	4308	6e-24	30 - 88	100	59 / 59	minus	ABC16951 ABC44097
MLOC	MLOC_62319.4	4261	6e-24	23 - 81	100	59 / 59	minus	ABC16951 ABC44097
MLOC	MLOC_62319.1	2611	6e-24	30 - 88	100	59 / 59	minus	ABC16951 ABC44097
MLOC	MLOC_62319.3	2837	6e-24	25 - 83	100	59 / 59	minus	ABC16951 ABC44097
JLOC1	JLOC1_40777.2	4296	3e-24	4170 - 4228	100	59 / 59	plus
JLOC1	JLOC1_40777.1	4172	3e-24	4046 - 4104	100	59 / 59	plus
Harvest35	U35_7929	540	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_7929 540 Hv_44K_v2
TCGCAAAAAGGCTGATGTTCCGCTCGTACTTGCAAAAAGGCTGATGTTCCGCTCGTACTT
GCAAAAAGGCTGATGTTCCGCTCGTACTTGCAAAAAGGCTGATGTTCAGAGAGGAATGCC
CAAGCGATCGAGCTCGAAGCAGTAGTCTTGCTTGCGCTCTTGCGTTTTTGTGGTCCTTCT
GCGATATATTTTGCAAAGGCCTGTAGCTTTCTCTAACTTTGTTAGACAGTGTGTACATCC
CACCGGATGCCTCTTGCCATAGGATCAGGATGGCTTCGTAGACGCCTCTTGCCATAGGAT
CAGGATGGCTTCGTAGACGTGAATGCCGTTGTAGATGATCTAGCTGTGTTTTTTGTTTTC
TGTTTTATTTTTCTTCCTTTCTGTGTAGTTCGCCCGGTAAATCTCATTTGATGTATCATC
AGGGCGGACTCGCTAACACACCGTTGCAAGCACCATAGTTTAACTATCTTTGCAAGTGTT
TCCGATATGTGGATAATAAATGTCTCTTGGATACAATTTGTGGTCAAAAAAAAAAAAAAA

Homology of Contig U35_7929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None