barSeed - Barley Seed Development Database

Probe CUST_33222_PI390587928

Source Contig U35_7930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33222_PI390587928	Hv_44K_v2	CAAAATATAGCAGAACCTTTTTGCCGGACTAAATTAGTTTCACTTGCATCATCAGTACAA	784	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249958.1	1802	7e-23	1633 - 1692	98	59 / 60	plus	ABC16412
MLOC	MLOC_67590.1	1270	7e-23	859 - 918	98	59 / 60	plus	ABC16412
JLOC1	JLOC1_44643.1	1088	4e-23	728 - 787	98	59 / 60	plus
Harvest21	ABC16412	861	3e-25	801 - 860	100	60 / 60	plus	ABC16412
Harvest35	U35_7930	845	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_7930 845 Hv_44K_v2
ATGGTGCAAGTGGTAAATATAGATGCCAAAAATGAGAAAGAGTCAAATGCTGCTATTTGT
AAGGAAGCCGTTTTAGGGTCACAGAGATCAGCTTTGGACGTGATGCCTGGTGAGCAGAAG
AGGAGCTCTTCCAGTTCCAGTGCCACCGACAGAGAGCCTATCAATTCTGAAACTGATCCT
GCCCCGGGCAAAGCATTATCGAGTGAAGACCCCTCTGTTTCAAACTCCAACCTTGTGTTT
GGCTACCTCAATCTTTTCTCAGATGGTGTTCATAACTTCACTGACGGGATGGCTCTTGGA
AGTGCTTTTCTGCTACATGGATCTGTTGGAGGATGGTCTAGAACTTTATTTCTGCTCGCT
CATGAACTTCCTCAAGAGATTGGAGATTTTGGGATTCTGGTTCGCTCAGGATTCACCGTA
TCTAAAGCCCTATTTTTCAACTTTCTCTCTGCGTTGGTTGCTCTTGGTGGGACAGCACTG
GCACTTTCTTTGGGAACGGATCCAGGACATTCCTCTTTGATTGAGGGATTTACTGCTGGT
GGTTTTATTTACATTGCTGTCGCGGGAGTCCTCCCACAGATGCACGATCAGAGAACTACG
CTAAGCAACTCAATGTGTCAGTTGACTTTCCTGACAATGGGAATGCTGGTGGCTCTTGGC
ATATCTTTGGTAGAATGATTTGGGCATCCACTTCTCTGTAGCTTTAGCGCTGAGATGCAC
TTAAATGAGTGGGATAAAATTTTCAACTACAGCCTGGAATATGAGTTCCGTGGATATTGT
GGCTCAAAATATAGCAGAACCTTTTTGCCGGACTAAATTAGTTTCACTTGCATCATCAGT
ACAAT

Homology of Contig U35_7930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g36420.4	370	8e-93	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi3g37910.1	480	1e-94
Arabidopsis v10	AT1G68100.1	469	2e-66	\| Symbols: IAR1 \| ZIP metal ion transporter family \| chr1:25521325-25524032 FORWARD LENGTH=469