barSeed - Barley Seed Development Database

Probe CUST_33219_PI390587928

Source Contig U35_7932

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33219_PI390587928	Hv_44K_v2	CGCAAGAGAAAGATGGGTTGCCATATGCATATTACAATATTTATTAGGTTGACACAAGAT	776	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250145.1	2068	2e-24	1967 - 2026	100	60 / 60	plus	ABC16344
MLOC	AK354043	4771	2e-24	4556 - 4615	100	60 / 60	plus	ABC16344
MLOC	MLOC_53226.1	1113	2e-24	786 - 845	100	60 / 60	plus	ABC16344
JLOC1	JLOC1_34173.1	1115	8e-25	785 - 844	100	60 / 60	plus
Harvest21	ABC16344	889	3e-25	777 - 836	100	60 / 60	plus	ABC16344
Harvest35	U35_7932	889	3e-25	777 - 836	100	60 / 60	plus

Contig Sequence (889 bp)

>U35_7932 889 Hv_44K_v2
CAGATTTGAGTGGTCTTGGTGTGCCCAATGTACCCCCTGCAGCTTGGGAGACAAGTGATG
TGGTGAAACTTGATCTTTCTAAGAACTTGATAGAAGATCTGCCAAATGAGTTGTCCCTGT
GCTCATCACTTCAAGCTTTGATTCTGTCTAATAACAAGATAAAAAAGTGGCCTGGCATGG
TTGTTTCCTCCCTTCCCAGTCTCACTTCCTTGAAGCTGGACAATAATCCTCTAGCAGCGA
TATCGTCCACTGATGTCGAGTCTCTATCAAAACTTGAAGTTCTTGATTTAAGTGGCAATG
CATCCTCATTGACTGAACCTTCTGTGATTTCTTCATTACCACAACTGCATGAACTCTATC
TTAGGCGAATGAAACTCCAGGGATTTCCTATTGGGCTCTTCCAGTTAAAACATCTACGGA
TTCTTAGCCTCAGTCAGAATCATCTCACAACCATACCTGAGGGTATCAAAGATTTTAGTG
CTCTCGTCGAGCTTGATCTTTCAGACAACAATATAACAGCGCTCCCAGCCGAGCTGGGTC
TGCTTGAGCCTAGCCTGCAAGTGCTCAAACTTGACGGAAATCCCCTTAGGAGCATAAGGC
GGACTGTTCTGGAGCGAGGAACGAAAGCTGTTCTCAGCTATCTCAAAGAAAAGCTTCCAT
CCAACTGAATAATATCATCATATATTCTGGCTGGAGTTATTCCCTTGGTTTCCCCCCTGC
CGTGTTGAATAAGTTTCCTGTGGTTGAAGTGTACTGAATTGTCTTGTGTGTGCGCACGCA
AGAGAAAGATGGGTTGCCATATGCATATTACAATATTTATTAGGTTGACACAAGATTATG
TGATTTGTATTTTATAATTCGAAGAAAGTTGGTTGGGTGAAAAAAAAAA

Homology of Contig U35_7932 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58030.1	587	6e-113	protein\|leucine-rich repeat-containing protein 40, putative, expressed
Brachypodium v1_2	Bradi3g56757.1	587	2e-123
Arabidopsis v10	AT3G15410.2	590	3e-73	Leucine-rich repeat (LRR) family protein \| chr3:5203380-5207279 FORWARD LENGTH=590