barSeed - Barley Seed Development Database

Probe CUST_33218_PI390587928

Source Contig U35_7934

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33218_PI390587928	Hv_44K_v2	GAACACCTCCTCAAATTGACAGATAAAGTGGTGGATGAATATGATTCATACTTTTTCCTA	854	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66827.2	2470	3e-22	980 - 1038	98	59 / 60	plus	ABC11308
MLOC	MLOC_66827.1	2475	3e-22	910 - 968	98	59 / 60	plus	ABC11308
JLOC1	JLOC1_44078.2	2013	1e-22	447 - 505	98	59 / 60	plus
JLOC1	JLOC1_44078.1	2535	1e-22	969 - 1027	98	59 / 60	plus
Harvest21	ABC16600	918	3e-25	855 - 914	100	60 / 60	plus
Harvest35	U35_7934	919	3e-25	855 - 914	100	60 / 60	plus

Contig Sequence (919 bp)

>U35_7934 919 Hv_44K_v2
GACAAGCTCAGCAAGCTCAAGGAGAAAAAAATATCTGCATCTCACGGCACCAAGCCCCGT
CCGGCCGTCCATTGCTAGCTGGAGAGGAAGGTTCGATGGAGAACACGGTGTACACCGTGA
AGGTGGGCGAGGGTACGCCGGCCGGCGGCGGCAGGCCCGCGGCCGGACCCGTCTACCGGA
GCATCTATGCCAAGGACGGCCTCATGCAGCTTCCGCAGGAAATCCATTCCCCATGGGACT
TCTTCAGTGGAGCAGTCAAGAAGTACCCCAAGAACAGAATGCTAGGACGGCGTCAGGTTT
CTGATGGCAAGGCTGGTGACTATGTGTGGCAAACTTATGAACAAGTGTACCAGAAAGTCA
TCCAGATTGGGGCAGCTATCAGAGGCTTCGGCGTTAAGCCCGGGGCTCACTGTGCCATAT
ATGGATCCAACTGCCCAGAATGGGTCATGGCCATGCAGGCTTGCAACAGCCAAGGAATTT
GTTATGTACCACTGTATGACACCCTTGGACAAAATGCAGTTCAATTCATCTTGGACCATG
CTGAGATCTCCATAGCCTTTATGCAGGAGAGCAAGATAAAATCAATTGCCGCCATACTCC
CAAAGTGCACAGCCCACATCAAAGCCATTGTTAGTTTTGGAGATGTGCCAATTGAGCTGA
AAAGGGAAGTTGAACAATTANGAGTATCTTGCTTTTCTTGGGAAGAATTTTCTACAATGG
GAGAAGAAATTCAAGAACTTCCTAAGAAACAAAAGGACGACATTTGTACAATCATGTATA
CCAGTGGAACAACAGGAGAGCCAAAGGGTGTGATAATCACGAACAGGGCTATCGTAGCTG
GGGTTACAACCACAGAACACCTCCTCAAATTGACAGATAAAGTGGTGGATGAATATGATT
CATACTTTTTCCTATCTTC

Homology of Contig U35_7934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g35400.1	662	2e-144	protein\|AMP-binding enzyme, putative, expressed
Brachypodium v1_2	Bradi4g16280.4	619	6e-153
Arabidopsis v10	AT1G49430.1	665	1e-90	\| Symbols: LACS2, LRD2 \| long-chain acyl-CoA synthetase 2 \| chr1:18291188-18295641 FORWARD LENGTH=665