barSeed - Barley Seed Development Database

Probe CUST_33214_PI390587928

Source Contig U35_7937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33214_PI390587928	Hv_44K_v2	AACTTTCTGGATAGGCAGGCAGAGGACGATGAATCATCTGAAGAAGATGCTAAGATTGCG	504	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.264	1.603	1.227	0.660	0.585	0.482
Raw	123.141	118.398	89.922	68.080	24.088	21.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36790.1	1638	2e-24	1476 - 1535	100	60 / 60	minus	None
MLOC	MLOC_36790.2	1807	2e-24	1469 - 1528	100	60 / 60	minus	None
MLOC	MLOC_36790.3	2171	2e-24	1469 - 1528	100	60 / 60	minus	None
JLOC1	JLOC1_23737.1	2170	8e-25	639 - 698	100	60 / 60	plus
Harvest35	U35_7937	619	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_7937 619 Hv_44K_v2
AGAAACAAAGAAAGGAAGAAAAACCCACGAAACAAATGGAAAATCGGGTGCCGCTCTCCT
CCGAATTCCCAACCCCCCCAATAAGTTACTCCGCAGCTTAGTTCGCACTCCCACGCAGAT
CAAATCTCACAGCCAGCACAGGAGTAGCTAGCATAGCACTCCAGCAGTATAATCGGATCG
GATCACCGCTGCTGCCCCCAACCACCCCTACCCTGAATCGCGCTGCGCTGCACTTCACTC
CCCAGCGCCCGCTCGCTCCCCGCACGCTCCGCCCCGCCCCGCCTCGCCGCCGGCCAGCTA
GGACAGCGGGAGGGGCGGGGGGTTGGCGGCGGCGGCGGCCCGACGCCGCGGCGCGAGATG
AAGGCCAAGAGCCTCCCCTTCATCGCCTTCGAGCACAAGCGGGACGCCTATGGTTTCGCT
GTGCGGCCACAACACTTGCAACGGTACAGAGAGTATGCCAACATCTACCAGGAGGAGGAA
GAGGGGAGGTCTGATAGATGGAAGAACTTTCTGGATAGGCAGGCAGAGGACGATGAATCA
TCTGAAGAAGATGCTAAGATTGCGCCGTCCATCGAGGATGAAGGAGCGGGCGATGCTGGC
AGGCCCGGCATCCCGATGA

Homology of Contig U35_7937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None