barSeed - Barley Seed Development Database

Probe CUST_33207_PI390587928

Source Contig U35_7941

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33207_PI390587928	Hv_44K_v2	CTGCGTGCATACTTAGGTTACAATTAAGCATATGATGGATGTTCTATGACTAAGAACATA	487	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.778	2.159	1.066	0.822	0.316	0.373
Raw	1829.067	2282.212	961.454	1213.113	154.915	202.724

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66597.2	1038	2e-24	92 - 151	100	60 / 60	minus	ABC11969 ABC49668
MLOC	MLOC_66597.1	2272	2e-24	143 - 202	100	60 / 60	minus	ABC11969 ABC49668
JLOC1	JLOC1_43908.1	2179	8e-25	1870 - 1929	100	60 / 60	plus
Harvest21	ABC49668	298	1e-23	93 - 152	98	59 / 60	minus	ABC49668
Harvest35	U35_7941	671	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_7941 671 Hv_44K_v2
GAGGCTTCAAGGGCGGCTGCTTCGAGTTCCTGCCATTTGGATCCGGGCGACGCTCGTGCC
CTGGGATGGCGCTTGGCCTGTATGCGCTGGAGCTCGCCGTCGCTCAGCTCACCCACGGGT
TCAGCTGGGCGCTACCTGATGGCATGAAGCCGTCAGAGCTCGACATGAGTGACATCTTCG
GCCTCACCGCGCCGCGTGCCACGAGGCTCTATGCCGTGCCCACACCCCGGCTCACCTGCC
CCTTGGTCGTTGACATTGATGTCGACAGCGCGCATCAGGCGTGATATCGTACGTGCGAGT
GTGTGCGCCCGTTGCCTTTGCGTGTGCCGTCAACAGTATCTACCAGCTGTGCAAGGGGGG
GGGGGTGTTTGATGGGAGGTGGTGGAGGTACCATTGCAAGAGTTTGGTGGTTTTCTCTTG
CATTTTGTTGTTGTTTTCTTTTTTGTTTCTGATACTGTAGAACATAATAAGGGGATGTCC
ATGCTACCTGCGTGCATACTTAGGTTACAATTAAGCATATGATGGATGTTCTATGACTAA
GAACATAAACTGTATAAACCGTATTATTTGAGACTTGTTGGGTCCAAATTCTGTAAATTT
TCTTTGTATGACAATTTTCTTTTAAGGCAAAAATTTCCACCTCTCTTTTCTCTTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_7941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None