barSeed - Barley Seed Development Database

Probe CUST_33206_PI390587928

Source Contig U35_45091

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33206_PI390587928	Hv_44K_v2	GGATCAAAGGTAGTTGATTCACTTGAAAACCAGCGGAATATGCCTGGCACTTCAAGGCAA	186	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4408.1	2583	2e-24	1771 - 1830	100	60 / 60	minus	ABC16318 ABC18572 ABC19945
JLOC1	JLOC1_2738.1	2613	8e-25	718 - 777	100	60 / 60	plus
Harvest21	ABC43532	302	3e-25	187 - 246	100	60 / 60	plus
Harvest35	U35_45091	302	3e-25	187 - 246	100	60 / 60	plus

Contig Sequence (302 bp)

>U35_45091 302 Hv_44K_v2
AATCTCTTGACTCAATTCTGGCAAGATCTAGCTATTGAAAAGAAGCCCATGCAAAAAAGT
GTTCATCAAAATGACAGAGCAACTGGGAAGGAGATTGATACAAATGAAACAGCTGTCGGG
ACATCCTCAATTATTGCAATTGATCCCAAACATCTCAAGGCTGAAAATGAGATGAGGCGC
ATTTTTGGATCAAAGGTAGTTGATTCACTTGAAAACCAGCGGAATATGCCTGGCACTTCA
AGGCAAGTGCGTGGTGTTAGGCGTGCTGCCCTTAATCCTAGAAGAACCCTCCTTGTATCT
CC

Homology of Contig U35_45091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None