barSeed - Barley Seed Development Database

Probe CUST_331_PI415269222

Source Contig TA34644_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_331_PI415269222	Hv_44K_v2	AGAAAATGGTGTCAGAATTCTGGATGACCTATACGCATGTCGACTCTGAAGTATTGTGTG	1820	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.509	1.338	1.230	1.068	0.457	0.435
Raw	1485.170	2079.385	1678.310	2208.990	345.690	353.956

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365905	2075	2e-24	1925 - 1984	100	60 / 60	plus	ABC05862
JLOC1	JLOC1_5473.1	1875	8e-25	1677 - 1736	100	60 / 60	plus
Harvest21	ABC05862	1754	3e-25	1607 - 1666	100	60 / 60	plus	ABC05862

Contig Sequence (1884 bp)

>TA34644_4513 1884 Hv_44K_v2
ATGAAGAGCAGCTGCTGCCGCAGAGCCAGCTCGCGGCGCACGGCGCCGCGCTCCTCCGTC
GGCGGCGTCGAGGGCGCGGGGGCCCCCGACGGGGTCGGCGCGGGAGCGGGCGCGGGGTCT
GGCGGGCGGACGGCCTCCTCCTCCACCTTCTGGTTCCTGCTGCACGCGGTCTGCTGCCTC
ATCTCGCTCTTCCTCGGCTTCCGCTTCTCCAGGCTGCTCTTCTTCCTGCTCTTATACAGC
AGCGCGCTCTACGCCGCCACCTCCAACAACAAGTCGGCCGTGCTCCGCGCCATCACCACC
ACCACGACGACCACGACGACCACCACCACCACCACCAACACCTTCACCCTCTCCTTCGCC
GCCGCGGGCAACCCGCCGCCGGCCAACCCGGACAACCTCACAGCCGCCGCGCTCGAGGAG
GCCGCGGGGAGCACGCAGAGCCACGTCGTCGTCGGCCGACACGGGATTCGGATCCGCCCC
TGGCCGCACCCCGACCCCGTCGAGGTCATGCGCGCGCACCGGATCATGGAGCGCGTGCAG
GAGGAGCAGCGCCGCTGGTACGGCGTCAGGGAGCCCCGCCAGGTGCTCGTCGTCACCCCG
ACCTACTCGCGCGCCTTCCAGGCGCTCCACCTCACCGGCCTCCTCCACTCGCTCCGCAAC
GTGCCCTACCCGCTAACCTGGATCGTCGTCGAGGCCGGCGGCGTCACCAACGCCACCGCG
GCCCTCCTCGCGCGCTCCAGCCTCACCTTCGTCCACGTCCCCTTCCCGGAAAAAATGCCC
CTCGAATGGGCCGACCGCCACGCCACTGAGAACCGCATGCGCCTCCATGCCTTACGGGTG
ATCCGGGAGAGGAAGATGGACGGTGTGGTTGTGTTTGCGGATGACAGCAACGTGCATAGC
ATGGAGCTGTTTGATGAGGTGCAGAAGGTCCAGTGGATGGCCGCCGTGTCTGTGGGTATC
CTTGCACACACCGGAACAGCAGAGCAGCCACGCCTTACCGAAGAGGACAAGAAGAACATG
CCACTTCCAGTCCAGGGTCCTGCCTGCAACTCTTCGGGGCATTTGGCTGGATGGCACACA
TTCAACACGCTGCCGTTCTCTGGGAAGACTGCCACGGTGGTTGGCGAGGCAGCACCGGTG
CTACCCAGGGGTTTGGAATGGGCTGGGTTTGTAATGAACTCTAGGATGTTGTGGAAGGAG
GCAGAGGGCAAGCCTGATTGGGTGAAGGACCTTGATGCTGTGGGGGAGAATGGGGAGGAG
ATTGAAAATCCTCTTACTCTCTTGAATGATGCGTCCTATGTTGAGCCGTTGGGGAACTGT
GGGAAGAAGGTCCTACTCTGGTGGCTCCGTGTCGAAGCCCGGGCCGATAGCAAGTTTCCA
CAAGGGTGGGTGATTGAGCCACCTTTGGAAGTCGTCGTTCCCGCCAAGCGCACACCATGG
CCAGAAGCCACCATGGATATTTCATCGGAGCTGTTAGACGCCAAGCAAGAGCAGGAGGAC
AGGCAGCTGCCAAGGACCAACAACAGGTCGGCCCGGCCCCGAAGCACCACCACGAAACGG
AAGGGCGACGTCCAGAACTGAGTCAGGATAAACAGATCATGTAATGTAAATCTCACATCA
TCTTACACCCGCGGTATCTGCAATAGGAGGCATGTCCGGTCGATCTAGTGGGTATTGTGT
TTATTTTTTTGTTTCCTGATGTTTTGCTCTGGTGGCAACGACGACGCCCTCGTGCTGGGG
ATATGTCTTCTTTAGGAGACCGTTTCGTTGTCTGTAGCCCTACTTGTTGTGCTTGTAATA
TAACACCGCAATTGATGTCAAGAAAATGGTGTCAGAATTCTGGATGACCTATACGCATGT
CGACTCTGAAGTATTGTGTGATCC

Homology of Contig TA34644_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g47340.1	525	0.0	protein\|glycosyltransferase family 43 protein, putative, expressed
Brachypodium v1_2	Bradi1g33320.3	530	0.0
Arabidopsis v10	AT5G67230.1	492	2e-155	\| Symbols: IRX14-L, I14H \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr5:26822506-26824181 FORWARD LENGTH=492