barSeed - Barley Seed Development Database

Probe CUST_3319_PI390587928

Source Contig U35_4122

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3319_PI390587928	Hv_44K_v2	GGAAGAACATGTTTGTAAGGCTCAGTAATTTTGTTGAAGTGGTGCATCGGCATTAAAAAA	1408	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.432	1.595	1.108	0.826	0.401	0.494
Raw	374.478	648.089	396.607	455.497	79.954	106.279

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59953.1	1320	9e-22	196 - 250	100	55 / 55	minus	ABC11246 ABC35460
JLOC1	JLOC1_39057.1	1501	5e-22	40 - 94	100	55 / 55	minus
Harvest35	U35_4122	1479	3e-25	1409 - 1468	100	60 / 60	plus

Contig Sequence (1479 bp)

>U35_4122 1479 Hv_44K_v2
GAGGTCTGGAGGTTAGAGAAAATAGGAAAAGATGGGTCGTTCCATAAGAGGCTGAATAAA
TCTGGAATTTTAACTGTTGAAGATTTTCTCAGGCTTGTTGTTCGGGATCCACAGAAGTTG
CGTACTATCCTCGGAAGTGGCATGTCCAACAAGATGTGGGATTCTCTTGTTGAACATGCA
AAAACCTGCGTCTTAAGTGGAAAATATTACATATACTATTCTGATGAGCACAGAACTGCT
GGTGCTATTTTCAACGACCTCTATGCATTCTGTGGGTTGATTTCTGGCGAGCAATTCTAT
TCATCTGAAAGTCTCGATGATGGCCAAAAGCTCTTTGCTGATGGGCTGGTGAAGAAAGCA
TATGATAATTGGATGTATGTTATTGAATATGATGGTAAAGCTCTCTTGAACCCTAAACCG
AAGAAAAAGGCTGCATTAACTAGTCAACCTGAGGCTCGTGCTCCTGCTGCATATGTACAG
CGCATTTCTTCAACGAGTATGCCAGGACCATCTACAGCAGGCTCAAATGGTTCTATAGGG
TATGATGGCAACCAGACAGCAACACAGTCTGTTCAGCTTCAGAGTTCATCTGCTAATGTG
CCGTTGCCATATGATGAGGCCTTTTCATTTTTGCCGCCTACCATGTTGATGGGTTCTAAT
CAAGGAACAGCAAGTGATGCCATGGGTCTGGAACTCAGCCAATTGCATCACACAATTTCT
CAAGCCCATCCAATTCAACCAGCAAATGTCAGCTACGATAATTGGCATCACAACCGTGAT
AGTCAGTATGCTGATGATTTCACCGAAGACATTCGCATGAAAAGCCACCAACTGCTCGAG
GGTGAAGACATGCAGCAGCTGCTCAGGGTCTTCAATATGGGTGGAGCTTCTCCTGGTTTG
CCAGACGAGACGTTTTCCTACCAGACCTACATGCCATCTCCATTGCCAACCCCAGGCTTC
GAAGGTGAGCCCAGCCGTCCATCGGGCAAAGCCGTTGTTGGGTGGCTCAAGATAAAGGCC
GCTATGAGGTGGGGAATATTTGTCAGGAAGAAAGCTGCGGAGAGAAGGGCACAGATTGTT
GAGCTGGATGATTAAGATCTTGGCGTGTGCTCACTGTTAGTTGAAATCTCAAATACCAGC
TGCTGTTGCTGCGAACTAGTTCTTTGGCTCACATATTCGTCGTGATTGCCATTGAAGCTA
GTTTTCTGTAAATCTACAGCGAGCAGCTCTGCTATCTTGTAAAAAAATGCCGACCCGCTT
CCTTGTATAATTTCAACATAAATTCTTGTTTAGTGCCTTTTCAAAAAAAAAAAAAAAATG
CAGAATATTGCTGTAGAAGACGATGTGAATTGATTTGAACAGTATTACGTTTTTGTGGCT
GTTACTTGGTTGGGGGTCCATAACTACTGGAAGAACATGTTTGTAAGGCTCAGTAATTTT
GTTGAAGTGGTGCATCGGCATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08120.2	625	0.0	protein\|calmodulin binding protein, putative, expressed
Brachypodium v1_2	Bradi3g05760.1	615	0.0
Arabidopsis v10	AT5G57580.1	647	3e-96	Calmodulin-binding protein \| chr5:23314994-23317683 REVERSE LENGTH=647