barSeed - Barley Seed Development Database

Probe CUST_33194_PI390587928

Source Contig U35_7950

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33194_PI390587928	Hv_44K_v2	ATTTAACATGTCTGTTCCTACTCCATACTGCTTCATGAGAAGGTTCCTCAAGGCAGCAGG	1035	GeneList: darkgreen MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.029	1.527	2.836	1.798	0.365	0.468
Raw	162.288	371.671	605.688	631.028	44.537	61.277

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70877.3	1101	2e-24	358 - 417	100	60 / 60	plus	ABC16702 ABC47766
MLOC	MLOC_70877.2	1874	2e-24	1149 - 1208	100	60 / 60	plus	ABC16702 ABC47766
MLOC	MLOC_70877.1	1948	2e-24	1174 - 1233	100	60 / 60	plus	ABC16702 ABC47766
JLOC1	JLOC1_47056.1	1989	8e-25	1099 - 1158	100	60 / 60	plus
JLOC1	JLOC1_21472.1	381	6e-21	208 - 264	98	56 / 57	plus
Harvest21	ABC42692	407	3e-25	288 - 347	100	60 / 60	plus
Harvest21	ABC15647	1145	3e-25	1036 - 1095	100	60 / 60	plus
Harvest35	U35_7950	1155	3e-25	1036 - 1095	100	60 / 60	plus

Contig Sequence (1155 bp)

>U35_7950 1155 Hv_44K_v2
GCTCCTCCTCTCTCCTACGCTCTCCGCTCCGCTCCTCCCCTCCCCTGCAGCAGCCGCGGC
GGCGAGCTACTCCCTCAACCTAGGTAGAGCCAGGGAGAGAGAGAGAGAGAGGCGGCGGCA
GCTTCTCCTTCTCCGTCGACCTCATCTGACCAACGAGGGTTTCCGGCCGTCGCCAGTAAT
GGAGAACGTGAGGTCTTTGAACCAAAGGGGCGCGGCCATGGAGGGCGTCAAGCTGGGTTC
GGAGGCGGCGGCCAACACCAACCGCAGGGCCCTGAGGGACATCAAGAACATCCTCGGCGC
CCCTCACCAGCCCCAGGCCGTCAGCAAGAGGGGCCTGCAAGAAAAACCAGCCGCCGCCGG
TGCCAAGAGCCAGCCTGGCGCCGTCGGTCACCGGCCGGTAACCAGGAAATTCGCCGCTAT
CCTGCAGCAATCGCAGCCCGCAAACGCCCCGCTGGCACCAAGTGGCAGTGAGAGGCAGAA
GAGAAATGCTGACACCGCGTTCAATGCTCCTTCAGACATGGAGGCTTCAGATGATGACCT
TGACGAGATGATGACAAATGAGCTCAAGGAGATCGACATGGAAGAGGACACAGAAGAGGA
GGAGGAAATGCCTGACATCGACAGCTGCGACGTCGGAAACTCCCTCGCGGTTGTGGAATA
CCTCGATGAAATTTACAGCTTCTACAGGAGAACCGAGGAACTGAGCTGCGTGTCACCCAC
CTACATGGCACACCAATCTGACATCAACGAGAAAATGCGCGGCATCCTGATCGACTGGCT
GATTGAGGTCCATTACAAGCTTGAGCTACTGGGTGAGACCCTTTTCCTTACTGTGAACAT
CATTGACAGATACCTGGCCCGGGAAAATGTCGCCAGGAAGAAGCTCCAGCTTGTTGGCGT
GACAGCCATGCTGCTGGCATGTAAATATGAGGAGGTCAGTGTCCCCGTTGTGGAGGATCT
GATCCTCATCTGCGACCGCGCCTACACCCGGGAAGACATTCTGGAAATGGAGAGGATGGT
CGTCGACAGGCTTGAATTTAACATGTCTGTTCCTACTCCATACTGCTTCATGAGAAGGTT
CCTCAAGGCAGCAGGGTCTGACAAGAAGCTGGAGCTGCTCTCCTTCTTCCTGATCGAGCT
GAGCCTGGTGGACTA

Homology of Contig U35_7950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51110.1	420	2e-139	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi1g29830.1	420	7e-147
Arabidopsis v10	AT1G20610.1	429	7e-82	\| Symbols: CYCB2;3 \| Cyclin B2;3 \| chr1:7135073-7137273 REVERSE LENGTH=429