barSeed - Barley Seed Development Database

Probe CUST_33187_PI390587928

Source Contig U35_7957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33187_PI390587928	Hv_44K_v2	CCCTCTCAAAACATTGATGCGTTGCATAACATCCTCCTAATAATTGTGCTGAGTTGGAAA	786	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.042	1.579	1.336	1.251	0.569	0.566
Raw	82.035	197.541	143.445	214.749	33.989	36.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375835	2619	6e-24	2540 - 2598	100	59 / 59	plus	ABC19803
MLOC	MLOC_25676.3	2269	6e-24	7 - 65	100	59 / 59	minus	ABC19803
MLOC	MLOC_25676.2	2151	6e-24	20 - 78	100	59 / 59	minus	ABC19803
MLOC	MLOC_25676.1	2042	6e-24	20 - 78	100	59 / 59	minus	ABC19803
JLOC1	JLOC1_17501.1	2237	3e-24	2077 - 2135	100	59 / 59	plus
Harvest35	U35_7957	860	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (860 bp)

>U35_7957 860 Hv_44K_v2
TATAGGGCGAATTGGGCCCTCTAGAAGATGCTCGAGCGGCCGCTCTTGCCACTGATTAGC
TAACATTTCCCCTTAAATTTAGAGTTTTGTAACTCAACAGGCGAAACATACGGTTTGGGG
GAGGCTTGGGCTCCTAGCCGCGCTCCCATCCAGCCGATCACATGAGAAGAAGATAGGGAG
AGATATAAGATTTCCTTTTTTGCATACACATGGTGTGCCTAGTAGAAAAGGATAGAAAAG
AGAAAGAGGACAGAGGTTGATCGGTAGGGTTTGTGCATGCAAAAATAGCGTCGGTCGCTC
CAAGAGCCCTTCGGGGGGCAGCGGCCGCTCTCCGATCGACTCTCTTCTGTACAGATGTGG
GCTCATGTGCACGTGCTCGAAATGCGCGAACGAGTTGGTTCGAAGCGGAGGGAAGTGTCC
GCTGTGCCGCGCACCCATTATTGAGGTGATCCGAGCTTACTTCATCATGTAACTAGATGG
TAGAATATACGAGGAAAGGAAGACAGAAGATGAAAGCCTTCTCTTGCAGCATGACAACAT
ATATAACCCGGACTATGATGTGATGATGATGATTGTTCAAATTCTTTTTTTGACACATTG
GTTGGCTGGCTGGTTGGTTGGTTGGTGTGTGTGTGTGTATACATAATCCTTGGTCTCACC
AATGTGTCGGTTCCCCCCCTCCTCTGATCTAGTGTAAGTATATGTGTTTCTTGGGTGGTC
TTCACTGATTTATTCATGGGTTTCTTTTCTTCTCGCAAACAAAGTTGACCTGATGAGATT
GCTCAGCCCTCTCAAAACATTGATGCGTTGCATAACATCCTCCTAATAATTGTGCTGAGT
TGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None