- Probe CUST_33185_PI390587928
- Source Contig U35_7959
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33185_PI390587928 | Hv_44K_v2 | GTTCCAACTTCGAACGATATGACGAAATTTTGGCGTATGGAGCCCTTTCGTTTCAAAAAA | 331 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.534 | 5.306 | 1.410 | 0.487 | 0.394 | 0.432 |
| Raw | 117.550 | 154.174 | 34.006 | 19.573 | 3.739 | 5.658 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56555.5 | 681 | 3e-21 | 625 - 678 | 100 | 54 / 54 | plus | ABC15587 |
| JLOC1 | JLOC1_36588.5 | 703 | 2e-21 | 617 - 670 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_36588.2 | 2410 | 2e-21 | 2324 - 2377 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_36588.1 | 2175 | 2e-21 | 2089 - 2142 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC15587 | 402 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus | ABC15587 |
| Harvest35 | U35_7959 | 402 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus |
Contig Sequence (402 bp)
>U35_7959 402 Hv_44K_v2 AAGATTTGAGGCCGCACAGCTCCAGCAGCGGAAGGATGGAGGCTGCGGCTCTGGCCCGGC TGCCGGAGGAGCTGGAGGAGAGGCTGCGCGGGTGGCTGGAGAGCTGGCCGGGGGGCGCGC TGCCGCCGGACCTCGCGAGGTTCGACACGGTGGACGACGCCGTCTCGTACCTCGTCAGGT CGGTGTGCGAGCTCGAGGTCGACGGCGAGGTGGGCTCCGTGCAGTGGTACCAGGTCCAGA TCGAATGAATAGCTAGAGCTACATTACAAGTATACGAGCACCATCCATCCAATGCTGCGT GACTGGACTGGACTGCATGTATATGTATGTAGTTCCAACTTCGAACGATATGACGAAATT TTGGCGTATGGAGCCCTTTCGTTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_7959 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |