barSeed - Barley Seed Development Database

Probe CUST_3317_PI390587928

Source Contig U35_4124

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3317_PI390587928	Hv_44K_v2	TTTTTGTCTTTGGGAATGTTGTGAGCTGTGTTTGCTGTTGAGGCCATATCCATACTTTTC	1300	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.240	1.309	1.202	0.930	0.395	0.393
Raw	7389.910	12406.180	9953.290	11884.957	1812.883	1948.420

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_9760.2	1273	8e-25	1018 - 1077	100	60 / 60	plus
JLOC1	JLOC1_9760.1	1204	8e-25	949 - 1008	100	60 / 60	plus
Harvest21	ABC09261	1052	3e-25	991 - 1050	100	60 / 60	plus
Harvest35	U35_4124	1363	3e-25	1301 - 1360	100	60 / 60	plus

Contig Sequence (1363 bp)

>U35_4124 1363 Hv_44K_v2
CCGCGGCGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAAGAGCTCCAGCGCCAGC
ACCGCGAGATCAGCGAGCGCCTGCGCGACCCCCGAGGCCTTCGACGCGGCGCTCCCGCCG
CCGGCCTCGGCCCGGGCCCCGGAGGCCCCCGCCCGCTCCGCGGCTTCGCCAGACCCGCCC
CGGAGCCGGCGGACCAGCCCGAGCCCAAGCGCCGGCTTCTGTCTGCCGTGGTTAAAGTGG
ATGGCTCTGGAACTAATGAGGATGACGCAGAGGGGCGAGGGGATGAGCCAACTGCCGCTC
AAGGTGGCGAGAGGAGGCGAGCCAGTAATGGTGGGTTCAGGAGGGATGGAAGCCAGTGGG
TATCCAGGAGGGAGCTTGATAATCAGCTGCCAGAGCCTCTCCCGAGGCCGGCTCCCAAGG
AAGAGGACCAGAGCTTGGTGAGGAGGAACAAGAGAATGCTGGGGAAGCTTCTTGTTGGCA
CGCTAGAGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTATGCGTA
GATCAGAGGCTCAGCAGAAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGATTGCGGC
AGCAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTGCTCGAG
TAGCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTGAGCATC
ACAAAAAGCTGTCCAGTTTCTTAAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGG
CTAAACCAATAGTTGATGATCCGCTTATTGTTGAGCAAAACAAGGAAAAGGCATTTGAAG
AATGGAAATCTGTGCGCAGAACGGAGCTCACACAGTTTCAAAAGCAAGTTGAGGAGCAGT
ATCTGTCTAACGTTGAGAGGCAGCTGGAAAGAATTTAGAATGCCCGGAATGCTCGGAGGG
GGAACGTGCCTGCTAACATGCAGGAAATGGACAAGGAGCTGGACACACACAGGGCGGAGC
ATGGCCCCAAGGCTCGGCGGATCCCCGACGGTGGCAACGACGAGGATGATGATGTGGACG
TGGACGACATGGCCGCGGAGGACGACCTGATGGATGAAGTGCTTGGCGTTAATGAGGCGA
TCAACGAGGACCCGACCAAGCCATCTGAAGAGGCTACCGATGTTGCCCCTGTACCCGAGG
AGGCACAGTAGGCAAAGTTATTTGCAAGGTAGGCACTTACGCATTATGATTCTATATCGT
TGTAGTTGCCCTCTTCTGTTGTGACTGTATTGTTGTTGGGTTTTTGTCTTTGGGAATGTT
GTGAGCTGTGTTTGCTGTTGAGGCCATATCCATACTTTTCATT

Homology of Contig U35_4124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49520.1	403	4e-150	protein\|pinin/SDK/memA protein, putative, expressed
Brachypodium v1_2	Bradi1g10810.1	405	1e-172
Arabidopsis v10	None