barSeed - Barley Seed Development Database

Probe CUST_33176_PI390587928

Source Contig U35_7971

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33176_PI390587928	Hv_44K_v2	CTTGGTTGAAGACACCTTTGCTATAGCAAAGCGATATCTAACTACATACTTTCTGATTGA	774	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250289.1	2667	7e-23	748 - 807	98	59 / 60	plus	ABC14681
MLOC	AK251183.1	2639	7e-23	758 - 817	98	59 / 60	plus	ABC14681
MLOC	MLOC_62136.3	1410	7e-23	408 - 467	98	59 / 60	minus	None
MLOC	MLOC_62136.1	1472	7e-23	633 - 692	98	59 / 60	minus	None
MLOC	MLOC_62136.2	1504	7e-23	633 - 692	98	59 / 60	minus	None
JLOC1	JLOC1_40642.7	756	4e-23	667 - 726	98	59 / 60	plus
JLOC1	JLOC1_40642.6	1612	4e-23	809 - 868	98	59 / 60	plus
JLOC1	JLOC1_40642.5	1571	4e-23	768 - 827	98	59 / 60	plus
JLOC1	JLOC1_40642.4	2210	4e-23	774 - 833	98	59 / 60	plus
JLOC1	JLOC1_40642.3	1332	4e-23	742 - 801	98	59 / 60	plus
JLOC1	JLOC1_40642.2	1364	4e-23	774 - 833	98	59 / 60	plus
JLOC1	JLOC1_40642.1	1479	4e-23	676 - 735	98	59 / 60	plus
Harvest21	ABC18124	844	3e-25	775 - 834	100	60 / 60	plus
Harvest35	U35_7971	844	3e-25	775 - 834	100	60 / 60	plus

Contig Sequence (844 bp)

>U35_7971 844 Hv_44K_v2
GGTCCGTTTGGGGTCGCGGTGGAGTTGGCGTGACTGCTTCGTTCCCTCGCGAGCGCGTCC
CGCCTACCCCTCGTTCTAGTCCCCGTCGTCGATACCCACCTCACTAGCTAAACTCCATCG
CCACCTCGTCCTCTTCCTCTTCGTCGGTGACGCTTCCCCTCCCCAAACGTTCCGTCCGGG
ACTCCGGGTCGCTTGCTCATCTGTTGCTGTGATTGTCAGAGATATGATACTTCAGTGCTG
CACTTGAAGATTTGATCCATCGTGGTCCTAGTCCTGTTCCATCTGCTGGTGCTAGGCAGA
CTGAATGGCTTTCCGAGAGGAGAGATATGTGAGGTTTCACGACTGGAGGTCAGAGTATTC
TGTTGGTTCAGATAAGATAGTTTCAGAAGGAAGGCATACTGCATTTGACTCACTAAAGGA
TAAGACTCTAGGAGCCTTCTCATTCTTAGGGAACAGTTCACGCCCTGAAACCCTGAACAA
ATCAACACCAGAGGAAAGGAAGGCCAAAACAAGAGTTCTTGATCCTCAAGGGCCGTTTTT
GCAAAGATGGAACAAGATATTTGTGATATCATGTCTTATTGCAGTTTCTGTGGACCCATT
ATTCTTTTATATCCCAGTGATTGATGGTGTCAAGAACTGCCTATATCTGGACAAAAAATT
GGCAACCATTGCAAGTATTCTGCGCTTTTTCACAGACATCTTCTATTTGCTTCATATAAT
ATTTCAGTTCAGAACAGGATTTGTTGCTCCTTCCAGAGTATTTGGTCGAGGTGTCTTGGT
TGAAGACACCTTTGCTATAGCAAAGCGATATCTAACTACATACTTTCTGATTGATTTTTT
AGCT

Homology of Contig U35_7971 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g15580.3	387	9e-105	protein\|cyclic nucleotide-gated ion channel 1, putative, expressed
Brachypodium v1_2	Bradi3g09550.1	701	3e-104
Arabidopsis v10	AT5G53130.1	716	1e-55	\| Symbols: CNGC1, ATCNGC1 \| cyclic nucleotide gated channel 1 \| chr5:21537830-21540490 REVERSE LENGTH=716