barSeed - Barley Seed Development Database

Probe CUST_33174_PI390587928

Source Contig U35_7973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33174_PI390587928	Hv_44K_v2	TTCAGAATTGGGAAGACCACCAAAATCGAAAATTCACAGGACGGCTGAACCGCAGGAAAT	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15448.2	2352	2e-24	960 - 1019	100	60 / 60	minus	ABC16654
MLOC	MLOC_15448.1	2704	2e-24	1071 - 1130	100	60 / 60	minus	ABC16654
JLOC1	JLOC1_10598.1	2662	8e-25	1434 - 1493	100	60 / 60	plus
Harvest21	ABC21036	759	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_7973	760	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_7973 760 Hv_44K_v2
GATTGTCAGCTACTGACAATGCAAACAGTGAGAAGGCTCCTTCTGGGGCCGGGAAGGCTG
TCTTGAAAGTTTCTGAGGATCAAACTCGGATGTTGCTGAATGTGATCAGTGAAATTCCCA
ACAACGAGTTGCTTCTCCAGAAACATTTCATGGCCATTCTTTCTTCTGTTTGGAGATCAA
AATGTGCTCATGAGCCCCGACGTGTTGCAAGTGTTTGTTCTAGTGCAACCCATAAGCCTG
TTAGATTGAGTGAGAACTGGTCCACGACAAACTACATGCCGTCCTTTAATCTTGTAAGGA
CAGCCCTTGCAGATGTTCAGGCCCAATGTCCAAGAGTGGCAATACCAACAAGCAATCAGG
AACCTCGCCGGAGGCATTTAGATTTAGTATTGGATTTCCGGACAGATCGACATGCTTACC
AGGCAGACTTTCCATCTGTAGTGAATATGTCCATACTAGAACCAGATCCTATTAGACGCA
CTGTTGCGCCGATGGAACAATCACTGCTGTCTGGGCTTCCTCATAGACATGCTGAGAACA
GATTCAGGATACCATCAGAAGCTTGTTTTGAAGGGGAAGGCTCTCACTGGGCATCATCTG
GTTTCCATGTGAACGATACTGCTCGACATAAATCTGGCTCAAAGTCCACAGGAAAGCACA
AAGCAGCTTCAGAATTGGGAAGACCACCAAAATCGAAAATTCACAGGACGGCTGAACCGC
AGGAAATGCCGGCTGTTAAGTGTTATTTTCGCCGATCCCC

Homology of Contig U35_7973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46450.1	1060	1e-103	protein\|helicase conserved C-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g57637.1	1062	2e-112
Arabidopsis v10	None